(Q28278502)

9

Stanislaw Dunin-Horkawicz

0 references

Kaja Milanowska-Zabel

Kaja Milanowska

2

0 references

Mark Helm

Mark Helm

11

0 references

Elzbieta Purta

4

Elzbieta Purta

0 references

Henri Grosjean

13

Henri Grosjean

0 references

Magdalena A Machnicka

1

Magdalena A Machnicka

0 references

Małgorzata Kurkowska

5

Malgorzata Kurkowska

0 references

author name string

Okan Osman Oglou

3

0 references

Anna Olchowik

6

0 references

Witold Januszewski

7

0 references

Sebastian Kalinowski

8

0 references

Kristian M Rother

Creative Commons Attribution-NonCommercial 3.0 Unported

10

0 references

language of work or name

English

0 references

publication date

January 2013

0 references

published in

Nucleic Acids Research

0 references

volume

41

0 references

issue

Database issue

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page(s)

D262-7

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copyright license

start time

4 October 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

0 references

cites work

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Comprehensive analysis of mRNA methylation reveals enrichment in 3' UTRs and near stop codons

20 March 2017

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Topology of the human and mouse m6A RNA methylomes revealed by m6A-seq

20 March 2017

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20 March 2017

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The RNA Modification Database, RNAMDB: 2011 update

20 March 2017

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Reactome: a database of reactions, pathways and biological processes

20 March 2017

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Rfam: Wikipedia, clans and the "decimal" release

20 March 2017

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Yeast targets for mRNA methylation

20 March 2017

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Agmatidine, a modified cytidine in the anticodon of archaeal tRNA(Ile), base pairs with adenosine but not with guanosine

20 March 2017

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The ribosome assembly factor Nep1 responsible for Bowen-Conradi syndrome is a pseudouridine-N1-specific methyltransferase

20 March 2017

1 reference

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LC/MS analysis of cellular RNA reveals NAD-linked RNA

20 March 2017

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VARNA: Interactive drawing and editing of the RNA secondary structure

20 March 2017

1 reference

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Identification of 8-methyladenosine as the modification catalyzed by the radical SAM methyltransferase Cfr that confers antibiotic resistance in bacteria

20 March 2017

1 reference

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snoRNA-LBME-db, a comprehensive database of human H/ACA and C/D box snoRNAs

20 March 2017

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PARALIGN: rapid and sensitive sequence similarity searches powered by parallel computing technology

20 March 2017

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The RCSB Protein Data Bank: a redesigned query system and relational database based on the mmCIF schema

20 March 2017

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The Small Subunit rRNA Modification Database

20 March 2017

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The comparative RNA web (CRW) site: an online database of comparative sequence and structure information for ribosomal, intron, and other RNAs

20 March 2017

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

A single methyltransferase YefA (RlmCD) catalyses both m5U747 and m5U1939 modifications in Bacillus subtilis 23S rRNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

TLR13 recognizes bacterial 23S rRNA devoid of erythromycin resistance-forming modification

20 March 2017

1 reference

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RNAcentral: A vision for an international database of RNA sequences

20 March 2017

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A chemical screen for biological small molecule-RNA conjugates reveals CoA-linked RNA

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Saccharomyces Genome Database: the genomics resource of budding yeast

20 March 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

UniProt Knowledgebase: a hub of integrated protein data

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

tRNAdb 2009: compilation of tRNA sequences and tRNA genes

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

PIWI associated siRNAs and piRNAs specifically require the Caenorhabditis elegans HEN1 ortholog henn-1.

7 April 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Identification of modifications in microbial, native tRNA that suppress immunostimulatory activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

The archaeal COG1901/DUF358 SPOUT-methyltransferase members, together with pseudouridine synthase Pus10, catalyze the formation of 1-methylpseudouridine at position 54 of tRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

3-(3-amino-3-carboxypropyl)-5,6-dihydrouridine is one of two novel post-transcriptional modifications in tRNALys(UUU) from Trypanosoma brucei.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Hen1 is required for oocyte development and piRNA stability in zebrafish.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

RNA methylation by Dnmt2 protects transfer RNAs against stress-induced cleavage

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Cytoscape Web: an interactive web-based network browser

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

New archaeal methyltransferases forming 1-methyladenosine or 1-methyladenosine and 1-methylguanosine at position 9 of tRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Agmatine-conjugated cytidine in a tRNA anticodon is essential for AUA decoding in archaea.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

YgdE is the 2'-O-ribose methyltransferase RlmM specific for nucleotide C2498 in bacterial 23S rRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

MODOMICS: a database of RNA modification pathways. 2008 update

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

An embarrassment of riches: the enzymology of RNA modification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

The HGNC Database in 2008: a resource for the human genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Reaction in alphavirus mRNA capping: formation of a covalent complex of nonstructural protein nsP1 with 7-methyl-GMP.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

New bioinformatic tools for analysis of nucleotide modifications in eukaryotic rRNA.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Competing pathways control host resistance to virus via tRNA modification and programmed ribosomal frameshifting

2 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Systems-Based Analysis of Modified tRNA Bases

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Identification of 5-hydroxycytidine at position 2501 concludes characterization of modified nucleotides in E. coli 23S rRNA.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

Creating a buzz about insect genomes.

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

The 3D rRNA modification maps database: with interactive tools for ribosome analysis

27 November 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3531130

27 November 2018

Identifiers

DOI

10.1093/NAR/GKS1007

1 reference

journals/nar/MachnickaMOPKOJKDRHBG13

DBLP publication ID

1 reference

DBLP Dataset 2021-01-02

28 January 2021

1 reference

1 reference

PubMed publication ID

23118484

1 reference