(Q36666333)

15 August 2017

The Escherichia coli peripheral inner membrane proteome (English)

1 reference

Marios Frantzeskos Sardis

15 August 2017

1 reference

Marios Frantzeskos Sardis

5

0 references

Malvina Papanastasiou

Malvina Papanastasiou

1

0 references

Michalis Aivaliotis

Michalis Aivaliotis

6

0 references

Anastassios Economou

Anastassios Economou

8

0 references

author name string

Georgia Orfanoudaki

2

1 reference

15 August 2017

Marina Koukaki

3

1 reference

15 August 2017

Nikos Kountourakis

4

1 reference

15 August 2017

Spyridoula Karamanou

7

1 reference

15 August 2017

10 December 2012

1 reference

Molecular & Cellular Proteomics

15 August 2017

1 reference

15 August 2017

12

1 reference

15 August 2017

3

1 reference

15 August 2017

599-610

1 reference

Breaking on through to the other side: protein export through the bacterial Sec system.

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

In vivo protein complex topologies: sights through a cross-linking lens

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Database resources of the National Center for Biotechnology Information

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The IntAct molecular interaction database in 2012

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Reorganizing the protein space at the Universal Protein Resource (UniProt)

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Direct membrane binding by bacterial actin MreB.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

EcoCyc: a comprehensive database of Escherichia coli biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The beginning of a beautiful friendship: cross-linking/mass spectrometry and modelling of proteins and multi-protein complexes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Insights into the extracytoplasmic stress response of Xanthomonas campestris pv. campestris: role and regulation of {sigma}E-dependent activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Advances in understanding E. coli cell fission

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Escherichia coli condensin MukB stimulates topoisomerase IV activity by a direct physical interaction.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Quantifying E. coli Proteome and Transcriptome with Single-Molecule Sensitivity in Single Cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The metabolic enzyme CTP synthase forms cytoskeletal filaments

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Bacterial actin MreB assembles in complex with cell shape protein RodZ.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Bacterial translation elongation factor EF-Tu interacts and colocalizes with actin-like MreB protein

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Investigation of protein-protein interactions in living cells by chemical crosslinking and mass spectrometry

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The IntAct molecular interaction database in 2010

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The Universal Protein Resource (UniProt) in 2010

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Exploring the inner membrane proteome of Escherichia coli: which proteins are eluding detection and why?

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Integral and peripheral association of proteins and protein complexes with Yersinia pestis inner and outer membranes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

MaxQuant enables high peptide identification rates, individualized p.p.b.-range mass accuracies and proteome-wide protein quantification

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

EcoCyc: a comprehensive view of Escherichia coli biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

NCBI BLAST: a better web interface

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Protein abundance profiling of the Escherichia coli cytosol

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The extracytoplasmic stress factor, sigmaE, is required to maintain cell envelope integrity in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Proteomics of integral membrane proteins--theory and application

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Advantages of combined transmembrane topology and signal peptide prediction--the Phobius web server

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Systematic identification of the subproteome of Escherichia coli cell envelope reveals the interaction network of membrane proteins and membrane-associated peripheral proteins

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Antagonistic interactions of kleisins and DNA with bacterial Condensin MukB.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Identification of a protein complex that assembles lipopolysaccharide in the outer membrane of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

A complexomic study of Escherichia coli using two-dimensional blue native/SDS polyacrylamide gel electrophoresis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The Escherichia coli proteome: past, present, and future prospects

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Highly accurate genome sequences of Escherichia coli K-12 strains MG1655 and W3110

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Large-scale identification of protein-protein interaction of Escherichia coli K-12

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Escherichia coli K-12: a cooperatively developed annotation snapshot--2005

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Actin homolog MreB and RNA polymerase interact and are both required for chromosome segregation in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Proteomic analysis of chlorosome-depleted membranes of the green sulfur bacterium Chlorobium tepidum.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Absolute quantification of proteins by LCMSE: a virtue of parallel MS acquisition

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Comparative evaluation of mass spectrometry platforms used in large-scale proteomics investigations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Protein complexes of the Escherichia coli cell envelope.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Interaction network containing conserved and essential protein complexes in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The membrane proteome of Halobacterium salinarum

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Blue silver: a very sensitive colloidal Coomassie G-250 staining for proteome analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

An actin-like gene can determine cell polarity in bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

DEG: a database of essential genes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Membrane binding by MinD involves insertion of hydrophobic residues within the C-terminal amphipathic helix into the bilayer

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The BglF sensor recruits the BglG transcription regulator to the membrane and releases it on stimulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Division site selection in Escherichia coli involves dynamic redistribution of Min proteins within coiled structures that extend between the two cell poles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Solution structure of the N‐terminal amphitropic domain of Escherichia coli glucose‐specific enzyme IIA in membrane‐mimetic micelles

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Interactions between phage-shock proteins in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Membrane localization of MinD is mediated by a C-terminal motif that is conserved across eubacteria, archaea, and chloroplasts

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Large-scale proteomic analysis of the human spliceosome

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Aerobic sn-glycerol-3-phosphate dehydrogenase from Escherichia coli binds to the cytoplasmic membrane through an amphipathic alpha-helix

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

EcoGene: a genome sequence database for Escherichia coli K-12.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The Escherichia coli NadR regulator is endowed with nicotinamide mononucleotide adenylyltransferase activity

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

30 September 2017

Moonlighting proteins.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The complete genome sequence of Escherichia coli K-12

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

PutA protein, a membrane-associated flavin dehydrogenase, acts as a redox-dependent transcriptional regulator

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Isolation of intracellular membranes by means of sodium carbonate treatment: application to endoplasmic reticulum

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Growth Stasis by Accumulated l -α-Glycerophosphate in Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Ribosome-membrane interaction. Nondestructive disassembly of rat liver rough microsomes into ribosomal and membranous components

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The organization of proteins in the human red blood cell membrane. A review

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

The fluid mosaic model of the structure of cell membranes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Selective release of content from microsomal vesicles without membrane disassembly. II. Electrophoretic and immunological characterization of microsomal subfractions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Chemical and functional properties of the native and reconstituted forms of the membrane-bound, aerobic glycerol-3-phosphate dehydrogenase of Escherichia coli

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

RodZ (YfgA) is required for proper assembly of the MreB actin cytoskeleton and cell shape in E. coli.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Bacterial cell division and the Z ring

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3591654

Detection and identification of stable oligomeric protein complexes in Escherichi coli inner membranes: a proteomics approach.

28 June 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Complexome of Escherichia coli envelope proteins under normal physiological conditions.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Systematic analysis of native membrane protein complexes in Escherichia coli.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Genome sequences of Escherichia coli B strains REL606 and BL21(DE3).

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

EchoLOCATION: an in silico analysis of the subcellular locations of Escherichia coli proteins and comparison with experimentally derived locations

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Proteomic study on gender differences in aging kidney of mice

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Analysis of the Escherichia coli RNA degradosome composition by a proteomic approach.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Unbiased quantitation of Escherichia coli membrane proteome using phase transfer surfactants

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Systematic localisation of proteins fused to the green fluorescent protein in Bacillus subtilis: identification of new proteins at the DNA replication factory.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Patterns of indirect protein interactions suggest a spatial organization to metabolism.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

A computational analysis of protein interactions in metabolic networks reveals novel enzyme pairs potentially involved in metabolic channeling

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Arabidopsis plasma membrane proteomics identifies components of transport, signal transduction and membrane trafficking.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

An alternative strategy for the membrane proteome analysis of the green sulfur bacterium Chlorobium tepidum using blue native PAGE and 2-D PAGE on purified membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Localization, annotation, and comparison of the Escherichia coli K-12 proteome under two states of growth.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

The RNase E of Escherichia coli is a membrane-binding protein

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

Escherichia coli phage-shock protein A (PspA) binds to membrane phospholipids and repairs proton leakage of the damaged membranes.

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FMCP.M112.024711

A novel membrane anchor function for the N-terminal amphipathic sequence of the signal-transducing protein IIAGlucose of the Escherichia coli phosphotransferase system

21 January 2018

1 reference

12 December 2020

The biotin carboxylase-biotin carboxyl carrier protein complex of Escherichia coli acetyl-CoA carboxylase

1 reference

12 December 2020

Molecular characterization of Escherichia coli FtsE and FtsX

1 reference

12 December 2020

Orientation of membrane vesicles from Escherichia coli prepared by different procedures

1 reference

12 December 2020

Alterations of protein complexes and pathways in genetic information flow and response to stimulus contribute to Escherichia coli resistance to balofloxacin

1 reference

12 December 2020

Identifiers

DOI

10.1074/MCP.M112.024711

1 reference

15 August 2017

1 reference

15 August 2017

PubMed publication ID

23230279

1 reference