Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36684805)
Watch
English
Phylogenetically resolving epidemiologic linkage.
scientific article published on 22 February 2016
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
title
Phylogenetically resolving epidemiologic linkage
(English)
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
author
Thomas Leitner
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
author name string
Ethan O Romero-Severson
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
Ingo Bulla
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
language of work or name
English
0 references
publication date
22 February 2016
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
number of pages
6
1 reference
based on heuristic
inferred from page(s)
published in
Proceedings of the National Academy of Sciences of the United States of America
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
volume
113
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
issue
10
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
page(s)
2690-2695
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
cites work
Recombination elevates the effective evolutionary rate and facilitates the establishment of HIV-1 infection in infants after mother-to-child transmission
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Reduced evolutionary rates in HIV-1 reveal extensive latency periods among replicating lineages
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Timing and order of transmission events is not directly reflected in a pathogen phylogeny
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
The genealogical population dynamics of HIV-1 in a large transmission chain: bridging within and among host evolutionary rates
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
HIV-1 transmission during early infection in men who have sex with men: a phylodynamic analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Birth-death skyline plot reveals temporal changes of epidemic spread in HIV and hepatitis C virus (HCV)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Characterization of human immunodeficiency virus type 1 (HIV-1) diversity and tropism in 145 patients with primary HIV-1 infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Phylogenetic analysis consistent with a clinical history of sexual transmission of HIV-1 from a single donor reveals transmission of highly distinct variants
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Viral linkage in HIV-1 seroconverters and their partners in an HIV-1 prevention clinical trial
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Science in court: the myth of HIV fingerprinting
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Dynamics of two separate but linked HIV-1 CRF01_AE outbreaks among injection drug users in Stockholm, Sweden, and Helsinki, Finland
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
High Multiplicity Infection by HIV-1 in Men Who Have Sex with Men.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Epidemic dynamics revealed in dengue evolution.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Genetic identity, biological phenotype, and evolutionary pathways of transmitted/founder viruses in acute and early HIV-1 infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Inflammatory genital infections mitigate a severe genetic bottleneck in heterosexual transmission of subtype A and C HIV-1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Identification and characterization of transmitted and early founder virus envelopes in primary HIV-1 infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Recent developments in the MAFFT multiple sequence alignment program
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Episodic sexual transmission of HIV revealed by molecular phylodynamics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Env length and N-linked glycosylation following transmission of human immunodeficiency virus Type 1 subtype B viruses
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Variation in HIV-1 set-point viral load: epidemiological analysis and an evolutionary hypothesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Stochastic or deterministic: what is the effective population size of HIV-1?
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
PHYML Online--a web server for fast maximum likelihood-based phylogenetic inference
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Molecular evidence of HIV-1 transmission in a criminal case
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Molecular investigation of transmission of human immunodeficiency virus type 1 in a criminal case
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Molecular analysis of human immunodeficiency virus strains associated with a case of criminal transmission of the virus.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Convergent evolution of reverse transcriptase (RT) genes of human immunodeficiency virus type 1 subtypes E and B following nucleoside analogue RT inhibitor therapies
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Phylogenetic analyses indicate an atypical nurse-to-patient transmission of human immunodeficiency virus type 1
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Consistent viral evolutionary changes associated with the progression of human immunodeficiency virus type 1 infection
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Stochastic processes strongly influence HIV-1 evolution during suboptimal protease-inhibitor therapy
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Molecular evidence for nosocomial transmission of human immunodeficiency virus from a surgeon to one of his patients
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Analysis of HIV-1 env gene sequences reveals evidence for a low effective number in the viral population
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Accurate reconstruction of a known HIV-1 transmission history by phylogenetic tree analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
HIV-1 dynamics in vivo: virion clearance rate, infected cell life-span, and viral generation time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Analysis of a rape case by direct sequencing of the human immunodeficiency virus type 1 pol and gag genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Convergent and divergent sequence evolution in the surface envelope glycoprotein of human immunodeficiency virus type 1 within a single infected patient
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Molecular epidemiology of HIV transmission in a dental practice
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
30 September 2017
Untangling the influences of unmodeled evolutionary processes on phylogenetic signal in a forensically important HIV-1 transmission cluster
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
28 June 2018
Molecular footprint of drug-selective pressure in a human immunodeficiency virus transmission chain
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
28 June 2018
Support for dental HIV transmission.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
28 June 2018
Sequence distances between env genes of HIV-1 from individuals infected from the same source: implications for the investigation of possible transmission events.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
28 June 2018
The continuing case of the Florida dentist
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
28 June 2018
An uncommon case of HIV-1 transmission due to a knife fight
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
Comparison of Bayesian and maximum-likelihood phylogenetic approaches in two legal cases involving accusations of transmission of HIV.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
Dynamics of total, linear nonintegrated, and integrated HIV-1 DNA in vivo and in vitro
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
Molecular testing of multiple HIV-1 transmissions in a criminal case.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
Human immunodeficiency virus type 1 infection after sexual abuse: value of nucleic acid sequence analysis in identifying the offender
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
Molecular investigation of human immunodeficiency virus (HIV) infection in a patient of an HIV-infected surgeon
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
5 September 2018
HIV forensics: pitfalls and acceptable standards in the use of phylogenetic analysis as evidence in criminal investigations of HIV transmission
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1073%2FPNAS.1522930113
retrieved
21 January 2018
Guidelines for HIV in court cases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1073%2FPNAS.1522930113
retrieved
21 January 2018
Florida Dentist Case: Research Affiliation and Ethics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4791024
retrieved
4 December 2018
No trial to come in Florida dentist case
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26903617
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Lack of HIV transmission in the practice of a dentist with AIDS
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/26903617
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1073/PNAS.1522930113
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
ADS bibcode
2016PNAS..113.2690R
0 references
Fatcat ID
release_h6qkaqdxqzc45k4dynivvo4vsi
1 reference
stated in
Fatcat
reference URL
https://api.fatcat.wiki/v0/release/h6qkaqdxqzc45k4dynivvo4vsi
retrieved
24 November 2022
based on heuristic
mapped directly with Wikidata item
PMCID
4791024
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
PubMed ID
26903617
1 reference
stated in
Europe PubMed Central
PMCID
4791024
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:26903617%20AND%20SRC:MED&resulttype=core&format=json
retrieved
8 March 2020
ResearchGate publication ID
295673928
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
