(Q36713989)

15 August 2017

Colored extrinsic fluctuations and stochastic gene expression (English)

1 reference

15 August 2017

Peter S Swain

3

0 references

author name string

Vahid Shahrezaei

series ordinal

1

1 reference

PMCID

2424296

15 August 2017

Julien F Ollivier

series ordinal

2

1 reference

15 August 2017

6 May 2008

1 reference

Molecular Systems Biology

15 August 2017

1 reference

15 August 2017

4

1 reference

15 August 2017

196

1 reference

Heritable stochastic switching revealed by single-cell genealogy

15 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise-limited frequency signal transmission in gene circuits.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Facile: a command-line network compiler for systems biology

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise in gene expression determines cell fate in Bacillus subtilis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Tunability and noise dependence in differentiation dynamics

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise in timing and precision of gene activities in a genetic cascade

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Variability and memory of protein levels in human cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise in transcription negative feedback loops: simulation and experimental analysis

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Stochastically driven genetic circuits.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Frequency domain analysis of noise in simple gene circuits.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Oscillations and variability in the p53 system

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise in protein expression scales with natural protein abundance

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Single-cell proteomic analysis of S. cerevisiae reveals the architecture of biological noise

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Real-time kinetics of gene activity in individual bacteria

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Contributions of low molecule number and chromosomal positioning to stochastic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Stochasticity in gene expression: from theories to phenotypes

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise propagation in gene networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Gene regulation at the single-cell level

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Robustness of cellular functions

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Control of stochasticity in eukaryotic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Summing up the noise in gene networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Structure and function of the feed-forward loop network motif

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Noise in eukaryotic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Frequency domain analysis of noise in autoregulated gene circuits.

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Negative autoregulation speeds the response times of transcription networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Network motifs: simple building blocks of complex networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Intrinsic and extrinsic contributions to stochasticity in gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Stochastic gene expression in a single cell

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Regulation of noise in the expression of a single gene

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Stochasticity in transcriptional regulation: origins, consequences, and mathematical representations

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Intrinsic noise in gene regulatory networks

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Engineering stability in gene networks by autoregulation

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Stochastic kinetic analysis of developmental pathway bifurcation in phage lambda-infected Escherichia coli cells

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Origins of extrinsic variability in eukaryotic gene expression

30 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Fast, accurate algorithm for numerical simulation of exponentially correlated colored noise.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2424296

Gene network shaping of inherent noise spectra.

28 June 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Noise characteristics of feed forward loops.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Efficient Exact Stochastic Simulation of Chemical Systems with Many Species and Many Channels

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

A general method for numerically simulating the stochastic time evolution of coupled chemical reactions

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

A feedforward loop motif in transcriptional regulation: induction and repression.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

The effect of negative feedback on noise propagation in transcriptional gene networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Adaptive variation in beach mice produced by two interacting pigmentation genes

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Propagation of extrinsic perturbation in a negatively auto-regulated pathway.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Dissecting timing variability in yeast meiosis.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Deviant effects in molecular reaction pathways.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Estimations of intrinsic and extrinsic noise in models of nonlinear genetic networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Efficient attenuation of stochasticity in gene expression through post-transcriptional control.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Signal detection, modularity, and the correlation between extrinsic and intrinsic noise in biochemical networks.

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Comparison of classical and autogenous systems of regulation in inducible operons

21 January 2018

1 reference

https://api.crossref.org/works/10.1038%2FMSB.2008.31

Dual feedback loops in the GAL regulon suppress cellular heterogeneity in yeast

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18463620

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Linking stochastic dynamics to population distribution: an analytical framework of gene expression

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18463620

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Dynamical systems: A unified colored-noise approximation

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/18463620

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1038/MSB.2008.31

1 reference

15 August 2017

1 reference

1 reference

15 August 2017

1 reference

PMCID

2424296