(Q36737848)

English

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails

scientific article published on 15 February 2008

In more languages

Statements

scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Genome comparison and proteomic characterization of Thermus thermophilus bacteriophages P23-45 and P74-26: siphoviruses with triplex-forming sequences and the longest known tails (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

1 reference

based on heuristic

inferred from title

Thermus thermophilus

object named as

Thermus thermophilus

1 reference

based on heuristic

inferred from title

Laurence Florens

5

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Zhanna Berdygulova

object named as

Zhanna Berdygulova

3

0 references

Sergei A Kozyavkin

object named as

Sergei A Kozyavkin

9

0 references

Arcady Mushegian

object named as

Arcady Mushegian

13

0 references

Michael P. Washburn

object named as

Michael Washburn

12

0 references

Erlan Ramanculov

4

object named as

Erlan Ramanculov

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Konstantin Severinov

14

object named as

Konstantin Severinov

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Leonid Minakhin

1

object named as

Leonid Minakhin

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

2

object named as

Manisha Goel

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

author name string

Galina Glazko

6

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Valeri N Karamychev

7

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Alexei I Slesarev

8

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Igor Khromov

10

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Hans-W Ackermann

11

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

language of work or name

0 references

publication date

15 February 2008

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

number of pages

13

1 reference

based on heuristic

inferred from page(s)

Journal of Molecular Biology

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

378

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

2

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

468-480

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

An approach to correlate tandem mass spectral data of peptides with amino acid sequences in a protein database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Quantitative proteomic analysis of distinct mammalian Mediator complexes using normalized spectral abundance factors

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

5500 Phages examined in the electron microscope

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Long homopurine*homopyrimidine sequences are characteristic of genes expressed in brain and the pseudoautosomal region

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

DNA structures, repeat expansions and human hereditary disorders.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Non-B DNA structure-induced genetic instability

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Protein repertoire of double-stranded DNA bacteriophages

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

The HHpred interactive server for protein homology detection and structure prediction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Replication-mediated instability of the GAA triplet repeat mutation in Friedreich ataxia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Breakpoints of gross deletions coincide with non-B DNA conformations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Cluster analysis of mass spectrometry data reveals a novel component of SAGA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Base-By-Base: single nucleotide-level analysis of whole viral genome alignments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

A model for random sampling and estimation of relative protein abundance in shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Replication stalling at Friedreich's ataxia (GAA)n repeats in vivo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Origins of highly mosaic mycobacteriophage genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

DTASelect and Contrast: tools for assembling and comparing protein identifications from shotgun proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Catalyzing bacterial speciation: correlating lateral transfer with genetic headroom

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Large-scale analysis of the yeast proteome by multidimensional protein identification technology

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Virioplankton: Viruses in Aquatic Ecosystems

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

NPS@: network protein sequence analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Triple-helix formation induces recombination in mammalian cells via a nucleotide excision repair-dependent pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Heuristic approach to deriving models for gene finding

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Evolutionary relationships among diverse bacteriophages and prophages: all the world's a phage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Transcription through a simple DNA repeat blocks replication elongation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Base-calling of automated sequencer traces using phred. I. Accuracy assessment

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

SEALS: a system for easy analysis of lots of sequences.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Characteristic enrichment of DNA repeats in different genomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Mechanisms of triplex-caused polymerization arrest

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Friedreich's ataxia: autosomal recessive disease caused by an intronic GAA triplet repeat expansion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Suicidal nucleotide sequences for DNA polymerization.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Occurrence of potential cruciform and H-DNA forming sequences in genomic DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Proteinase sensitivity of bacteriophage lambda tail proteins gpJ and pH in complexes with the lambda receptor

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

The codon Adaptation Index--a measure of directional synonymous codon usage bias, and its potential applications

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Optimal alignments in linear space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Magnesium ion-dependent triple-helix structure formed by homopurine-homopyrimidine sequences in supercoiled plasmid DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Formation of DNA triplexes accounts for arrests of DNA synthesis at d(TC)n and d(GA)n tracts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Intramolecular DNA triplexes: unusual sequence requirements and influence on DNA polymerization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Isolation and characterization of a bacteriophage infectious to an extreme thermophile, Thermus thermophilus HB8

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Molecular genetics of bacteriophage P22

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

DNA H form requires a homopurine-homopyrimidine mirror repeat.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

29 September 2017

Thermus thermophilus bacteriophage phiYS40 genome and proteomic characterization of virions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

28 June 2018

Genome of Xanthomonas oryzae bacteriophage Xp10: an odd T-odd phage

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

28 June 2018

Temporal regulation of viral transcription during development of Thermus thermophilus bacteriophage phiYS40.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

A peptidoglycan hydrolase motif within the mycobacteriophage TM4 tape measure protein promotes efficient infection of stationary phase cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

Synonymous codon usage bias in 16 Staphylococcus aureus phages: implication in phage therapy.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

Inhibitory effects of expanded GAA.TTC triplet repeats from intron I of the Friedreich ataxia gene on transcription and replication in vivo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

Transcription-dependent recombination induced by triple-helix formation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

Tail length determination in bacteriophage T4.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

A long purine-pyrimidine homopolymer acts as a transcriptional diode

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

5 September 2018

Statistical Analysis of Membrane Proteome Expression Changes inSaccharomycescerevisiae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

4 December 2018

Genomic sequence and analysis of the atypical temperate bacteriophage N15 1 1Edited by M. Gottesman

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2440725

4 December 2018

Specific mutations induced by triplex-forming oligonucleotides in mice

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison of synonymous codon distribution patterns of bacteriophage and host genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Isolation and characterization of Thermus bacteriophages

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Length determination in bacteriophage lambda tails

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Determination of bacteriophage λ tail length by a protein ruler

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Mutational analysis of two structural genes of the temperate lactococcal bacteriophage TP901-1 involved in tail length determination and baseplate assembly

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Proteomic Analysis by Multidimensional Protein Identification Technology

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

High-throughput production of optimized primers (fimers) for whole-genome direct sequencing

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Filamentous phage integration requires the host recombinases XerC and XerD

1 reference

https://pubmed.ncbi.nlm.nih.gov/18355836

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2008.02.018

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q36737848&oldid=1809363406"