(Q36765256)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27025941%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

title

Genome scale patterns of supercoiling in a bacterial chromosome (English)

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31 March 2020

1

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31 March 2020

author name string

Amlanjyoti Dhar

2

1 reference

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31 March 2020

Andrei Trostel

3

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31 March 2020

Fedor Kouzine

4

1 reference

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31 March 2020

Aswin S N Seshasayee

5

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31 March 2020

Sankar Adhya

6

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31 March 2020

language of work or name

English

0 references

publication date

30 March 2016

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31 March 2020

published in

Nature Communications

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31 March 2020

volume

7

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31 March 2020

page(s)

11055

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Creative Commons Attribution 4.0 International

31 March 2020

copyright license

start time

30 March 2016

1 reference

April 2022 Public Data File from Crossref

copyright status

copyrighted

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cites work

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Transcription-dependent dynamic supercoiling is a short-range genomic force

29 September 2017

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Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures

29 September 2017

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29 September 2017

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Gene order and chromosome dynamics coordinate spatiotemporal gene expression during the bacterial growth cycle

29 September 2017

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Genomic analysis of DNA binding and gene regulation by homologous nucleoid-associated proteins IHF and HU in Escherichia coli K12.

29 September 2017

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A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding

29 September 2017

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Starr: Simple Tiling ARRay analysis of Affymetrix ChIP-chip data

29 September 2017

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29 September 2017

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The Sequence Alignment/Map format and SAMtools

29 September 2017

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Fast and accurate short read alignment with Burrows-Wheeler transform

29 September 2017

1 reference

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Spiral structure of Escherichia coli HU provides foundation for DNA supercoiling

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Homeostatic regulation of supercoiling sensitivity coordinates transcription of the bacterial genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

A genetic selection for supercoiling mutants of Escherichia coli reveals proteins implicated in chromosome structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Genomic transcriptional response to loss of chromosomal supercoiling in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Spatial patterns of transcriptional activity in the chromosome of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Macrodomain organization of the Escherichia coli chromosome.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Flexible DNA bending in HU-DNA cocrystal structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

A microarray-based antibiotic screen identifies a regulatory role for supercoiling in the osmotic stress response of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Growth phase-dependent variation in protein composition of the Escherichia coli nucleoid

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

The chromatin-associated protein H-NS alters DNA topology in vitro

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Regulation of bacterial DNA supercoiling: plasmid linking numbers vary with growth temperature

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Protein HU in the enzymatic replication of the chromosomal origin of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Mode of Action of Novobiocin in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Effect of Circularity and Superhelicity on Transcription from Bacteriophage λ DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Changes in the linking number of supercoiled DNA accompany growth transitions in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

DNA gyrase binds to the family of prokaryotic repetitive extragenic palindromic sequences

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

A physiological role for DNA supercoiling in the osmotic regulation of gene expression in S. typhimurium and E. coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Superhelical torsion in cellular DNA responds directly to environmental and genetic factors

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Identification of a central regulator of stationary-phase gene expression inEscherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Bacterial DNA supercoiling and [ATP]/[ADP] ratio: changes associated with salt shock

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Localized torsional tension in the DNA of human cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Dynamics of DNA supercoiling by transcription in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Recombination promoted by superhelical DNA and the recA gene of Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

E. coli DNA binding protein HU forms nucleosome-like structure with circular double-stranded DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Promoter-specific inhibition of transcription by antibiotics which act on DNA gyrase

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Structure and reactions of closed duplex DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

DNA gyrase: an enzyme that introduces superhelical turns into DNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

DNA gyrase: subunit structure and ATPase activity of the purified enzyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Binding of psoralen derivatives to DNA and chromatin: influence of the ionic environment on dark binding and photoreactivity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Direct and indirect effects of H-NS and Fis on global gene expression control in Escherichia coli

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Coordination of genomic structure and transcription by the main bacterial nucleoid-associated protein HU.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Psoralen monoadducts and interstrand cross-links in DNA

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Transcription generates positively and negatively supercoiled domains in the template.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Histone-like protein HU and bacterial DNA topology: suppression of an HU deficiency by gyrase mutations.

28 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Promoter selectivity of Escherichia coli RNA polymerase E sigma 70 and E sigma 38 holoenzymes. Effect of DNA supercoiling.

5 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4820846

Photoreactions at 3655 Angstrom between pyrimidine bases and skin-photosensitizing furocoumarins

5 September 2018

1 reference

12 December 2020

Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies

1 reference

12 December 2020

Bacterial DNA supercoiling and [ATP]/[ADP]. Changes associated with a transition to anaerobic growth

1 reference

12 December 2020

Variation in HU composition during growth of Escherichia coli: the heterodimer is required for long term survival

1 reference

12 December 2020

FIS modulates growth phase-dependent topological transitions of DNA in Escherichia coli

1 reference

12 December 2020

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

1 reference

12 December 2020

A DNA architectural protein couples cellular physiology and DNA topology in Escherichia coli

1 reference

12 December 2020

Identifiers

DOI

10.1038/NCOMMS11055

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27025941%20AND%20SRC:MED&resulttype=core&format=json

31 March 2020

0 references

1 reference

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31 March 2020

PubMed publication ID

27025941

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:27025941%20AND%20SRC:MED&resulttype=core&format=json