(Q36946305)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23416946%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

title

Transcription forms and remodels supercoiling domains unfolding large-scale chromatin structures (English)

1 reference

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24 February 2020

9

1 reference

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24 February 2020

James G. Prendergast

4

1 reference

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24 February 2020

Scott L Cockroft

7

1 reference

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24 February 2020

Nick Gilbert

10

1 reference

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24 February 2020

author name string

Catherine Naughton

1

1 reference

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24 February 2020

Nicolaos Avlonitis

2

1 reference

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24 February 2020

Samuel Corless

3

1 reference

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24 February 2020

Ioulia K Mati

5

1 reference

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24 February 2020

Paul P Eijk

6

1 reference

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24 February 2020

Mark Bradley

8

1 reference

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24 February 2020

publication date

17 February 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23416946%20AND%20SRC:MED&resulttype=core&format=json

Nature Structural & Molecular Biology

24 February 2020

published in

1 reference

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24 February 2020

volume

20

1 reference

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24 February 2020

page(s)

387-395

1 reference

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24 February 2020

issue

3

1 reference

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https://scigraph.springernature.com/pub.10.1038/nsmb.2509

24 February 2020

exact match

0 references

cites work

Gene density, transcription, and insulators contribute to the partition of the Drosophila genome into physical domains

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29 September 2017

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29 September 2017

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High-throughput sequencing reveals a simple model of nucleosome energetics

29 September 2017

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Analysis of active and inactive X chromosome architecture reveals the independent organization of 30 nm and large-scale chromatin structures

29 September 2017

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A method for genome-wide analysis of DNA helical tension by means of psoralen-DNA photobinding

29 September 2017

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Cohesin: a global player in chromosome biology with local ties to gene regulation.

29 September 2017

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Large-scale chromatin structure of inducible genes: transcription on a condensed, linear template.

29 September 2017

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Nascent RNA sequencing reveals widespread pausing and divergent initiation at human promoters

29 September 2017

1 reference

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Divergent transcription from active promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

RNA exosome depletion reveals transcription upstream of active human promoters

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Progressive loss of estrogen receptor alpha cofactor recruitment in endocrine resistance.

29 September 2017

1 reference

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Breaking barriers to transcription elongation

29 September 2017

1 reference

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An isochore map of human chromosomes

29 September 2017

1 reference

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The role of chromatin structure in regulating the expression of clustered genes.

29 September 2017

1 reference

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Flavopiridol, an inhibitor of transcription: implications, problems and solutions

29 September 2017

1 reference

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Chromatin architecture of the human genome: gene-rich domains are enriched in open chromatin fibers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Chromatin decondensation and nuclear reorganization of the HoxB locus upon induction of transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Estrogen receptor-alpha directs ordered, cyclical, and combinatorial recruitment of cofactors on a natural target promoter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

The human transcriptome map reveals extremes in gene density, intron length, GC content, and repeat pattern for domains of highly and weakly expressed genes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Clustering of housekeeping genes provides a unified model of gene order in the human genome

29 September 2017

1 reference

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The human transcriptome map: clustering of highly expressed genes in chromosomal domains

29 September 2017

1 reference

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Twenty-five years of the nucleosome, fundamental particle of the eukaryote chromosome

29 September 2017

1 reference

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29 September 2017

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Visualization of G1 chromosomes: a folded, twisted, supercoiled chromonema model of interphase chromatid structure

29 September 2017

1 reference

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Presence of negative torsional tension in the promoter region of the transcriptionally poised dihydrofolate reductase gene in vivo

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

A random-walk/giant-loop model for interphase chromosomes

29 September 2017

1 reference

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Yeast RNA polymerase II transcription of circular DNA at different degrees of supercoiling

29 September 2017

1 reference

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Preparation and characterization of biotinylated psoralen

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

RNA polymerase II interacts with the promoter region of the noninduced hsp70 gene in Drosophila melanogaster cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Supercoiling of the DNA template during transcription

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Gamma rays and bleomycin nick DNA and reverse the DNase I sensitivity of beta-globin gene chromatin in vivo

29 September 2017

1 reference

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Psoralens as photoactive probes of nucleic acid structure and function: organic chemistry, photochemistry, and biochemistry

29 September 2017

1 reference

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Periodicity of DNA folding in higher order chromatin structures

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Negative supercoiling of DNA facilitates an interaction between transcription factor IID and the fibroin gene promoter

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

DNA superhelicity affects the formation of transcription preinitiation complex on eukaryotic genes differently

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Localized torsional tension in the DNA of human cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Positional dependence of transcriptional inhibition by DNA torsional stress in yeast chromosomes

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Structure of a psoralen cross-linked DNA in solution by nuclear magnetic resonance

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Topoisomerase I interacts with transcribed regions in Drosophila cells.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Supercoiling of intracellular DNA can occur in eukaryotic cells.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

DNA supercoiling facilitates formation of the transcription initiation complex on the fibroin gene promoter

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Rapid induction of c-fos transcription reveals quantitative linkage of RNA polymerase II and DNA topoisomerase I enzyme activities

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Chromatin organization is a major influence on regional mutation rates in human cancer cells.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Genome-wide identification of chromosomal regions of increased tumor expression by transcriptome analysis

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Local domains of supercoiling activate a eukaryotic promoter in vivo

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Attenuation in the control of SV40 gene expression

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3689368

Ring1-mediated ubiquitination of H2A restrains poised RNA polymerase II at bivalent genes in mouse ES cells

4 September 2018

1 reference

Torsional tension in the DNA double helix measured with trimethylpsoralen in living E. coli cells: analogous measurements in insect and human cells

21 January 2018

1 reference

Torsional stress promotes the DNAase I sensitivity of active genes

31 March 2020

1 reference

Expression of transfected DNA depends on DNA topology

31 March 2020

1 reference

Topoisomerases and yeast rRNA transcription: negative supercoiling stimulates initiation and topoisomerase activity is required for elongation

31 March 2020

1 reference

Metaphase chromosome structure: Evidence for a radial loop model

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.2509

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23416946%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23416946%20AND%20SRC:MED&resulttype=core&format=json

24 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:23416946%20AND%20SRC:MED&resulttype=core&format=json