(Q36800430)

English

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions

scientific article published on 12 March 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Patterns of regulatory activity across diverse human cell types predict tissue identity, transcription factor binding, and long-range interactions (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Terrence S. Furey

8

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Nathan C. Sheffield

object named as

Nathan C Sheffield

1

0 references

object named as

Boris Lenhard

6

0 references

4

object named as

Alexias Safi

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

John Stamatoyannopoulos

5

object named as

John A Stamatoyannopoulos

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Gregory E. Crawford

7

object named as

Gregory E Crawford

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

3

object named as

Lingyun Song

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

author name string

Robert E Thurman

2

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

publication date

12 March 2013

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Genome Research

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

23

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

5

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

777-788

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

The accessible chromatin landscape of the human genome

1 reference

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29 September 2017

The macrosatellite DXZ4 mediates CTCF-dependent long-range intrachromosomal interactions on the human inactive X chromosome.

1 reference

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Extensive evolutionary changes in regulatory element activity during human origins are associated with altered gene expression and positive selection

1 reference

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Effects of sequence variation on differential allelic transcription factor occupancy and gene expression

1 reference

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Dynamic long-range chromatin interactions control Myb proto-oncogene transcription during erythroid development

1 reference

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Cell-type specific and combinatorial usage of diverse transcription factors revealed by genome-wide binding studies in multiple human cells

1 reference

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29 September 2017

Open chromatin defined by DNaseI and FAIRE identifies regulatory elements that shape cell-type identity

1 reference

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29 September 2017

Transcription factor AP1 potentiates chromatin accessibility and glucocorticoid receptor binding

1 reference

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29 September 2017

Mapping and analysis of chromatin state dynamics in nine human cell types

1 reference

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An integrated pipeline for the genome-wide analysis of transcription factor binding sites from ChIP-Seq.

1 reference

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Epithelioid glioblastoma changed to typical glioblastoma: the methylation status of MGMT promoter and 5-ALA fluorescence

1 reference

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Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

1 reference

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29 September 2017

High-resolution genome-wide in vivo footprinting of diverse transcription factors in human cells

1 reference

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Gene expression profiling of human breast tissue samples using SAGE-Seq

1 reference

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Regularization Paths for Generalized Linear Models via Coordinate Descent

1 reference

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Genomics of long-range regulatory elements

1 reference

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ENCODE whole-genome data in the UCSC Genome Browser

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JASPAR 2010: the greatly expanded open-access database of transcription factor binding profiles

1 reference

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29 September 2017

Finding distal regulatory elements in the human genome

1 reference

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Cis-regulatory mutations in human disease

1 reference

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CTCF: master weaver of the genome

1 reference

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Global mapping of protein-DNA interactions in vivo by digital genomic footprinting

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Epithelial and pseudoepithelial differentiation in glioblastoma and gliosarcoma: a comparative morphologic and molecular genetic study

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Poised RNA polymerase II gives pause for thought

1 reference

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The origins of medulloblastoma subtypes

1 reference

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Identification and characterization of cell type-specific and ubiquitous chromatin regulatory structures in the human genome

1 reference

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CpG island mapping by epigenome prediction

1 reference

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The IRF family, revisited

1 reference

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Type I interferon [corrected] gene induction by the interferon regulatory factor family of transcription factors

1 reference

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A germline-specific class of small RNAs binds mammalian Piwi proteins

1 reference

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Adjusting batch effects in microarray expression data using empirical Bayes methods

1 reference

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Global and gene-specific analyses show distinct roles for Myod and Myog at a common set of promoters

1 reference

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Evolutionarily conserved elements in vertebrate, insect, worm, and yeast genomes

1 reference

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The novel ETS factor TEL2 cooperates with Myc in B lymphomagenesis

1 reference

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GATA1 function, a paradigm for transcription factors in hematopoiesis

1 reference

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Control of pancreas and liver gene expression by HNF transcription factors

1 reference

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29 September 2017

Sp1- and Krüppel-like transcription factors

1 reference

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29 September 2017

Beta-globin locus control region HS2 and HS3 interact structurally and functionally

1 reference

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1 reference

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The human genome browser at UCSC

1 reference

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Functional and binding studies of HS3.2 of the beta-globin locus control region

1 reference

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1 reference

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Assembly requirements of PU.1-Pip (IRF-4) activator complexes: inhibiting function in vivo using fused dimers

1 reference

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Formation of pluripotent stem cells in the mammalian embryo depends on the POU transcription factor Oct4

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The activity of a highly promiscuous AP-1 element can be confined to neurons by a tissue-selective repressive element

1 reference

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NTera 2 cells: a human cell line which displays characteristics expected of a human committed neuronal progenitor cell

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An enhancer deletion affects both H19 and Igf2 expression

1 reference

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MyoD1: a nuclear phosphoprotein requiring a Myc homology region to convert fibroblasts to myoblasts

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The role of Jun, Fos and the AP-1 complex in cell-proliferation and transformation

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12 December 2020

based on heuristic

inferred from PubMed ID database lookup

rtracklayer: an R package for interfacing with genome browsers

1 reference

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27 June 2018

Transcriptional features of genomic regulatory blocks

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4 December 2018

Identifiers

10.1101/GR.152140.112

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

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