Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q36860570)
Watch
English
Relating protein adduction to gene expression changes: a systems approach
scientific article published on 19 May 2011
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
title
Relating protein adduction to gene expression changes: a systems approach
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
author
Daniel C. Liebler
series ordinal
6
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
Bing Zhang
series ordinal
1
object named as
Bing Zhang
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
author name string
Zhiao Shi
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
Dexter T Duncan
series ordinal
3
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
Naresh Prodduturi
series ordinal
4
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
Lawrence J Marnett
series ordinal
5
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
language of work or name
English
0 references
publication date
19 May 2011
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
published in
Molecular BioSystems
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
volume
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
issue
7
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
page(s)
2118-2127
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
describes a project that uses
limma
1 reference
stated in
Europe PubMed Central
retrieved
22 June 2022
reference URL
https://europepmc.org/article/PMC/3659419
based on heuristic
inferred from PubMed Central ID database lookup
cites work
Co-expression module analysis reveals biological processes, genomic gain, and regulatory mechanisms associated with breast cancer progression
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Systems analysis of protein modification and cellular responses induced by electrophile stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Network-assisted protein identification and data interpretation in shotgun proteomics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Integrating proteomic, transcriptional, and interactome data reveals hidden components of signaling and regulatory networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Bridging high-throughput genetic and transcriptional data reveals cellular responses to alpha-synuclein toxicity
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cellular stress and RNA splicing
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Global analysis of protein damage by the lipid electrophile 4-hydroxy-2-nonenal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
WikiPathways: pathway editing for the people
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Design logic of a cannabinoid receptor signaling network that triggers neurite outgrowth
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Walking the interactome for prioritization of candidate disease genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Identification of protein targets of 4-hydroxynonenal using click chemistry for ex vivo biotinylation of azido and alkynyl derivatives.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Protein damage by reactive electrophiles: targets and consequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Heat shock factor 1 attenuates 4-Hydroxynonenal-mediated apoptosis: critical role for heat shock protein 70 induction and stabilization of Bcl-XL.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Revealing signaling pathway deregulation by using gene expression signatures and regulatory motif analysis.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Alterations of metabolic activity in human osteoarthritic osteoblasts by lipid peroxidation end product 4-hydroxynonenal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cell survival responses to environmental stresses via the Keap1-Nrf2-ARE pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Bioconductor: an open source framework for bioinformatics and computational biology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
A systems approach to mapping DNA damage response pathways
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Endogenous reactive intermediates as modulators of cell signaling and cell death.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cytosolic and nuclear protein targets of thiol-reactive electrophiles
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Alterations in gene expression induced by the lipid peroxidation product, 4-hydroxy-2-nonenal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
4-Hydroxynonenal induces rat gamma-glutamyl transpeptidase through mitogen-activated protein kinase-mediated electrophile response element/nuclear factor erythroid 2-related factor 2 signaling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Specific patterns of electrophile adduction trigger Keap1 ubiquitination and Nrf2 activation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
WebGestalt: an integrated system for exploring gene sets in various biological contexts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
oPOSSUM: identification of over-represented transcription factor binding sites in co-expressed genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Mining for regulatory programs in the cancer transcriptome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Systematic discovery of regulatory motifs in human promoters and 3' UTRs by comparison of several mammals
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Identification of promoters bound by c-Jun/ATF2 during rapid large-scale gene activation following genotoxic stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
4-hydroxynonenal and regulation of cell cycle: effects on the pRb/E2F pathway
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cytoscape: a software environment for integrated models of biomolecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Exploration, normalization, and summaries of high density oligonucleotide array probe level data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Elevated expression of heat shock factor (HSF) 2A stimulates HSF1-induced transcription during stress
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Genome-wide in silico identification of transcriptional regulators controlling the cell cycle in human cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Discovering regulatory and signalling circuits in molecular interaction networks
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
TIP49b, a regulator of activating transcription factor 2 response to stress and DNA damage
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
IkappaB kinase, a molecular target for inhibition by 4-hydroxy-2-nonenal
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Functional analysis of the human CDC5L complex and identification of its components by mass spectrometry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Anti-inflammatory cyclopentenone prostaglandins are direct inhibitors of IkappaB kinase
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Regulation of protein phosphatase 2A activity by heat shock transcription factor 2
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
A mammalian homolog of fission yeast Cdc5 regulates G2 progression and mitotic entry
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
The retinoblastoma protein pathway and the restriction point
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Structure and cell cycle-regulated transcription of the human cyclin A gene
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cyclin A-associated kinase activity is rate limiting for entrance into S phase and is negatively regulated in G1 by p27Kip1.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cellular targets for activation by the E2F1 transcription factor include DNA synthesis- and G1/S-regulatory genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
The E2F transcription factor is a cellular target for the RB protein
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
Cyclin A is required at two points in the human cell cycle
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
29 September 2017
4-Hydroxynonenal, a product of cellular lipid peroxidation, which modulates c-myc and globin gene expression in K562 erythroleukemic cells
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
27 June 2018
Identifying regulatory subnetworks for a set of genes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
4 September 2018
Physical network models.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3659419
retrieved
4 September 2018
Treatment of the budding yeast Saccharomyces cerevisiae with the lipid peroxidation product 4-HNE provokes a temporary cell cycle arrest in G1 phase
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1039%2FC1MB05014A
retrieved
21 January 2018
Identifiers
DOI
10.1039/C1MB05014A
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
PMC publication ID
3659419
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
PubMed publication ID
21594272
1 reference
stated in
Europe PubMed Central
PMC publication ID
3659419
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:21594272%20AND%20SRC:MED&resulttype=core&format=json
retrieved
1 February 2020
ResearchGate publication ID
51148232
0 references
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit