(Q36870086)

English

The QM/MM molecular dynamics and free energy simulations of the acylation reaction catalyzed by the serine-carboxyl peptidase kumamolisin-As

scientific article published on 28 February 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

The QM/MM molecular dynamics and free energy simulations of the acylation reaction catalyzed by the serine-carboxyl peptidase kumamolisin-As (English)

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

object named as

Qin Xu

1

0 references

object named as

Hao-Bo Guo

2

0 references

Alexander Wlodawer

3

object named as

Alexander Wlodawer

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

author name string

Toru Nakayama

4

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

Hong Guo

5

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

language of work or name

0 references

publication date

28 February 2007

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

46

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

12

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

3784-3792

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

All-atom empirical potential for molecular modeling and dynamics studies of proteins

1 reference

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Extension of the PDDG/PM3 Semiempirical Molecular Orbital Method to Sulfur, Silicon, and Phosphorus

1 reference

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The importance of dynamics in substrate-assisted catalysis and specificity

1 reference

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29 September 2017

Crystallographic and biochemical investigations of kumamolisin-As, a serine-carboxyl peptidase with collagenase activity.

1 reference

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Two inhibitor molecules bound in the active site of Pseudomonas sedolisin: a model for the bi-product complex following cleavage of a peptide substrate

1 reference

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Structural and enzymatic properties of the sedolisin family of serine-carboxyl peptidases

1 reference

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Collagenolytic serine-carboxyl proteinase from Alicyclobacillus sendaiensis strain NTAP-1: purification, characterization, gene cloning, and heterologous expression

1 reference

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Serine protease mechanism and specificity

1 reference

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Structure and mechanism of the pepsin-like family of aspartic peptidases

1 reference

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The 1.4 a crystal structure of kumamolysin: a thermostable serine-carboxyl-type proteinase

1 reference

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Inhibitor complexes of the Pseudomonas serine-carboxyl proteinase

1 reference

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Carboxyl proteinase from Pseudomonas defines a novel family of subtilisin-like enzymes

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The human CLN2 protein/tripeptidyl-peptidase I is a serine protease that autoactivates at acidic pH

1 reference

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Substrate-assisted catalysis: molecular basis and biological significance

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Tripeptidyl-peptidase I is apparently the CLN2 protein absent in classical late-infantile neuronal ceroid lipofuscinosis

1 reference

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Association of mutations in a lysosomal protein with classical late-infantile neuronal ceroid lipofuscinosis

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Purification and properties of a pepstatin-insensitive carboxyl proteinase from a gram-negative bacterium

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Processing, catalytic activity and crystal structures of kumamolisin-As with an engineered active site.

1 reference

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Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes

1 reference

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A general acid-base mechanism for the stabilization of a tetrahedral adduct in a serine-carboxyl peptidase: a computational study

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1.2 A crystal structure of the serine carboxyl proteinase pro-kumamolisin; structure of an intact pro-subtilase

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Theoretical Perspectives on the Reaction Mechanism of Serine Proteases: The Reaction Free Energy Profiles of the Acylation Process

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1 reference

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Identifiers

10.1021/BI061737P

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

ResearchGate publication ID

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