(Q36883672)

English

Crystal structures of beryllium fluoride-free and beryllium fluoride-bound CheY in complex with the conserved C-terminal peptide of CheZ reveal dual binding modes specific to CheY conformation

scientific article published on 6 April 2006

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scholarly article

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Europe PubMed Central

PMC publication ID

16 August 2017

Crystal structures of beryllium fluoride-free and beryllium fluoride-bound CheY in complex with the conserved C-terminal peptide of CheZ reveal dual binding modes specific to CheY conformation (English)

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Europe PubMed Central

PMC publication ID

16 August 2017

crystal structure

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inferred from title

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Ann M Stock

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author name string

Jayita Guhaniyogi

1

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Europe PubMed Central

PMC publication ID

16 August 2017

Victoria L Robinson

2

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Europe PubMed Central

PMC publication ID

16 August 2017

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publication date

6 April 2006

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Europe PubMed Central

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16 August 2017

number of pages

22

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Journal of Molecular Biology

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Europe PubMed Central

PMC publication ID

16 August 2017

359

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Europe PubMed Central

PMC publication ID

16 August 2017

3

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Europe PubMed Central

PMC publication ID

16 August 2017

624-645

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

A common dimerization interface in bacterial response regulators KdpE and TorR.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

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Mechanism of activation for transcription factor PhoB suggested by different modes of dimerization in the inactive and active states

1 reference

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29 September 2017

Structural analysis and solution studies of the activated regulatory domain of the response regulator ArcA: a symmetric dimer mediated by the alpha4-beta5-alpha5 face

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Simulated diffusion of phosphorylated CheY through the cytoplasm of Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Making sense of it all: bacterial chemotaxis

1 reference

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29 September 2017

Single-cell FRET imaging of phosphatase activity in the Escherichia coli chemotaxis system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Refinement of macromolecular structures by the maximum-likelihood method

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Automated refinement of protein models

1 reference

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29 September 2017

The CCP4 suite: programs for protein crystallography

1 reference

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29 September 2017

iMolTalk: an interactive, internet-based protein structure analysis server.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Cellular stoichiometry of the components of the chemotaxis signaling complex

1 reference

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29 September 2017

Likelihood-enhanced fast rotation functions

1 reference

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29 September 2017

CASTp: Computed Atlas of Surface Topography of proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

CheZ phosphatase localizes to chemoreceptor patches via CheA-short

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Molecular dynamics of the FixJ receiver domain: movement of the beta4-alpha4 loop correlates with the in and out flip of Phe101.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Structure and catalytic mechanism of the E. coli chemotaxis phosphatase CheZ

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Crystal structure of 4-amino-5-hydroxymethyl-2-methylpyrimidine phosphate kinase from Salmonella typhimurium at 2.3 A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Molecular information processing: lessons from bacterial chemotaxis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Phosphoaspartates in bacterial signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

BeF(3)(-) acts as a phosphate analog in proteins phosphorylated on aspartate: structure of a BeF(3)(-) complex with phosphoserine phosphatase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

A distinct meta-active conformation in the 1.1-A resolution structure of wild-type ApoCheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Conformational coupling in the chemotaxis response regulator CheY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Crystal structure of activated CheY. Comparison with other activated receiver domains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Crystal structure of an activated response regulator bound to its target

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Further insights into the mechanism of function of the response regulator CheY from crystallographic studies of the CheY--CheA(124--257) complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

How signals are heard during bacterial chemotaxis: protein-protein interactions in sensory signal propagation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

A tale of two components: a novel kinase and a regulatory switch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

The 1.9 A resolution crystal structure of phosphono-CheY, an analogue of the active form of the response regulator, CheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

NMR structure of activated CheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Conformational changes induced by phosphorylation of the FixJ receiver domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Structure of a transiently phosphorylated switch in bacterial signal transduction

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Beryllofluoride mimics phosphorylation of NtrC and other bacterial response regulators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Phosphorylated aspartate in the structure of a response regulator protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

C-terminal DNA binding stimulates N-terminal phosphorylation of the outer membrane protein regulator OmpR from Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Throwing the switch in bacterial chemotaxis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Crystallography & NMR System: A New Software Suite for Macromolecular Structure Determination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Proposed signal transduction role for conserved CheY residue Thr87, a member of the response regulator active-site quintet

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Two binding modes reveal flexibility in kinase/response regulator interactions in the bacterial chemotaxis pathway

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

High-resolution crystal structures of human hemoglobin with mutations at tryptophan 37beta: structural basis for a high-affinity T-state,

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Structure of the CheY-binding domain of histidine kinase CheA in complex with CheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Uncoupled phosphorylation and activation in bacterial chemotaxis. The 2.3 A structure of an aspartate to lysine mutant at position 13 of CheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Crystal structures of CheY mutants Y106W and T87I/Y106W. CheY activation correlates with movement of residue 106

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Conserved C-terminus of the phosphatase CheZ is a binding domain for the chemotactic response regulator CheY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

The three-dimensional structure of two mutants of the signal transduction protein CheY suggest its molecular activation mechanism

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

SURFNET: a program for visualizing molecular surfaces, cavities, and intermolecular interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Structure of the Mg(2+)-bound form of CheY and mechanism of phosphoryl transfer in bacterial chemotaxis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Assignments, secondary structure, global fold, and dynamics of chemotaxis Y protein using three- and four-dimensional heteronuclear (13C,15N) NMR spectroscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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29 September 2017

Uncoupled phosphorylation and activation in bacterial chemotaxis. The 2.1-A structure of a threonine to isoleucine mutant at position 87 of CheY

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

2 New M13 vectors for cloning

1 reference

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29 September 2017

Homologies between the Salmonella typhimurium CheY protein and proteins involved in the regulation of chemotaxis, membrane protein synthesis, and sporulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Three-dimensional structure of CheY, the response regulator of bacterial chemotaxis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

Calculation of protein extinction coefficients from amino acid sequence data

1 reference

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WHAT IF: a molecular modeling and drug design program

1 reference

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29 September 2017

Aluminofluoride and beryllofluoride complexes: a new phosphate analogs in enzymology

1 reference

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29 September 2017

Analysis of protein loop closure. Two types of hinges produce one motion in lactate dehydrogenase

1 reference

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29 September 2017

Improved methods for building protein models in electron density maps and the location of errors in these models

1 reference

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29 September 2017

Crystal structure of Escherichia coli CheY refined at 1.7-A resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

29 September 2017

16 Plasmids of Escherichia coli as cloning vectors

1 reference

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29 September 2017

SAS solution structures of the apo and Mg2+/BeF3(-)-bound receiver domain of DctD from Sinorhizobium meliloti.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

4 September 2018

Structure of the constitutively active double mutant CheYD13K Y106W alone and in complex with a FliM peptide

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

4 September 2018

Characterization of the CheAS/CheZ complex: a specific interaction resulting in enhanced dephosphorylating activity on CheY-phosphate.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

4 September 2018

Signal transduction in chemotaxis. A propagating conformation change upon phosphorylation of CheY.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3666561

4 September 2018

Identification of the binding interfaces on CheY for two of its targets, the phosphatase CheZ and the flagellar switch protein fliM

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Millisecond-timescale motions contribute to the function of the bacterial response regulator protein Spo0F

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Two-state allosteric behavior in a single-domain signaling protein

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Processing of X-ray diffraction data collected in oscillation mode

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Response Regulators CheB and CheY Exhibit Competitive Binding to the Kinase CheA

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The CheZ-binding surface of CheY overlaps the CheA- and FliM-binding surfaces

1 reference

https://pubmed.ncbi.nlm.nih.gov/16674976

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1016/J.JMB.2006.03.050

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

release_ff3e4u6lyneudiqydbrzegsjxm

1 reference

https://api.fatcat.wiki/v0/release/ff3e4u6lyneudiqydbrzegsjxm

24 November 2022

based on heuristic

mapped directly with Wikidata item

PMC publication ID

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Europe PubMed Central

PMC publication ID

16 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

16 August 2017

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