(Q36909335)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18772224%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

title

Kinetics and thermodynamics of salt-dependent T7 gene 2.5 protein binding to single- and double-stranded DNA (English)

1 reference

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13 January 2020

0 references

6

1 reference

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13 January 2020

4

Andreas Hanke

1 reference

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13 January 2020

author name string

Leila Shokri

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18772224%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

Boriana Marintcheva

2

1 reference

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13 January 2020

Mootaz Eldib

3

1 reference

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13 January 2020

Ioulia Rouzina

5

1 reference

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13 January 2020

language of work or name

English

0 references

publication date

4 September 2008

1 reference

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13 January 2020

number of pages

10

1 reference

inferred from page(s)

published in

Nucleic Acids Research

1 reference

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13 January 2020

volume

36

1 reference

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13 January 2020

issue

17

1 reference

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13 January 2020

page(s)

5668-5677

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18772224%20AND%20SRC:MED&resulttype=core&format=json

Acidic C-terminal tail of the ssDNA-binding protein of bacteriophage T7 and ssDNA compete for the same binding surface

13 January 2020

cites work

1 reference

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Microsecond dynamics of protein-DNA interactions: direct observation of the wrapping/unwrapping kinetics of single-stranded DNA around the E. coli SSB tetramer

29 September 2017

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Exploring the interaction of ruthenium(II) polypyridyl complexes with DNA using single-molecule techniques.

29 September 2017

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Theory of electrostatically regulated binding of T4 gene 32 protein to single- and double-stranded DNA.

29 September 2017

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Target search of N sliding proteins on a DNA

29 September 2017

1 reference

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Effect of single-stranded DNA-binding proteins on the helicase and primase activities of the bacteriophage T7 gene 4 protein

29 September 2017

1 reference

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Essential amino acid residues in the single-stranded DNA-binding protein of bacteriophage T7. Identification of the dimer interface

29 September 2017

1 reference

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Force spectroscopy of single DNA and RNA molecules

29 September 2017

1 reference

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Stopped-flow studies of the kinetics of single-stranded DNA binding and wrapping around the Escherichia coli SSB tetramer

29 September 2017

1 reference

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A distinctive single-strand DNA-binding protein from the Archaeon Sulfolobus solfataricus

29 September 2017

1 reference

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Thermodynamics of DNA interactions from single molecule stretching experiments.

29 September 2017

1 reference

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Structure of the gene 2.5 protein, a single-stranded DNA binding protein encoded by bacteriophage T7

29 September 2017

1 reference

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T7 single strand DNA binding protein but not T7 helicase is required for DNA double strand break repair

29 September 2017

1 reference

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Force-induced melting of the DNA double helix. 2. Effect of solution conditions

29 September 2017

1 reference

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Effect of pH on the overstretching transition of double-stranded DNA: evidence of force-induced DNA melting

29 September 2017

1 reference

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Structure of the DNA binding domain of E. coli SSB bound to ssDNA

29 September 2017

1 reference

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Adenine base unstacking dominates the observed enthalpy and heat capacity changes for the Escherichia coli SSB tetramer binding to single-stranded oligoadenylates

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Gene 4 helicase of bacteriophage T7 mediates strand transfer through pyrimidine dimers, mismatches, and nonhomologous regions

29 September 2017

1 reference

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Role of the bacteriophage T7 and T4 single-stranded DNA-binding proteins in the formation of joint molecules and DNA helicase-catalyzed polar branch migration

29 September 2017

1 reference

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Single-stranded DNA binding protein and DNA helicase of bacteriophage T7 mediate homologous DNA strand exchange.

29 September 2017

1 reference

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Bacteriophage T7 gene 2.5 protein: an essential protein for DNA replication

29 September 2017

1 reference

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Acidic carboxyl-terminal domain of gene 2.5 protein of bacteriophage T7 is essential for protein-protein interactions

29 September 2017

1 reference

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Escherichia coli single-stranded DNA-binding protein: multiple DNA-binding modes and cooperativities

29 September 2017

1 reference

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Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. I. Characterization of the binding interactions

29 September 2017

1 reference

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Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. III. Binding properties of two specific proteolytic digestion products of the protein (G32P*I and G32P*III).

29 September 2017

1 reference

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On the thermodynamics and kinetics of the cooperative binding of bacteriophage T4-coded gene 32 (helix destabilizing) protein to nucleic acid lattices

29 September 2017

1 reference

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A DNA-Binding Protein Induced by Bacteriophage T7

29 September 2017

1 reference

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Single-stranded DNA binding proteins required for DNA replication

29 September 2017

1 reference

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Effects of monovalent anions on a temperature-dependent heat capacity change for Escherichia coli SSB tetramer binding to single-stranded DNA

29 September 2017

1 reference

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Diffusion-driven mechanisms of protein translocation on nucleic acids. 3. The Escherichia coli lac repressor--operator interaction: kinetic measurements and conclusions.

27 June 2018

1 reference

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Stimulation of T7 DNA polymerase by a new phage-coded protein

27 June 2018

1 reference

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Theoretical aspects of DNA-protein interactions: co-operative and non-co-operative binding of large ligands to a one-dimensional homogeneous lattice.

27 June 2018

1 reference

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Two binding modes in Escherichia coli single strand binding protein-single stranded DNA complexes. Modulation by NaCl concentration.

27 June 2018

1 reference

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Purification and characterization of the bacteriophage T7 gene 2.5 protein. A single-stranded DNA-binding protein

27 June 2018

1 reference

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Nonspecific interaction of lac repressor with DNA: an association reaction driven by counterion release.

27 June 2018

1 reference

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First passage time of N excluded-volume particles on a line.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Salt dependent binding of T4 gene 32 protein to single and double-stranded DNA: single molecule force spectroscopy measurements

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

The C-terminal domain of full-length E. coli SSB is disordered even when bound to DNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Mechanical measurement of single-molecule binding rates: kinetics of DNA helix-destabilization by T4 gene 32 protein

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

The carboxyl-terminal domain of bacteriophage T7 single-stranded DNA-binding protein modulates DNA binding and interaction with T7 DNA polymerase

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Kinetic regulation of single DNA molecule denaturation by T4 gene 32 protein structural domains.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Kinetic mechanism of direct transfer of Escherichia coli SSB tetramers between single-stranded DNA molecules

4 September 2018

1 reference

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Pentalysine-deoxyribonucleic acid interactions: a model for the general effects of ion concentrations on the interactions of proteins with nucleic acids.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

Diffusion-driven mechanisms of protein translocation on nucleic acids. 1. Models and theory.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2553585

The effect of the T7 and Escherichia coli DNA-binding proteins at the replication fork of bacteriophage T7

4 September 2018

1 reference

12 December 2020

Interactions of gene 2.5 protein and DNA polymerase of bacteriophage T7

1 reference

12 December 2020

A highly salt-dependent enthalpy change for Escherichia coli SSB protein-nucleic acid binding due to ion-protein interactions

1 reference

12 December 2020

Role of the acidic carboxyl-terminal domain of the single-stranded DNA-binding protein of bacteriophage T7 in specific protein-protein interactions

1 reference

12 December 2020

Calorimetric studies of E. coli SSB protein-single-stranded DNA interactions. Effects of monovalent salts on binding enthalpy

1 reference

12 December 2020

Single molecule force spectroscopy of salt-dependent bacteriophage T7 gene 2.5 protein binding to single-stranded DNA

1 reference

12 December 2020

Kinetics and mechanism of the association of the bacteriophage T4 gene 32 (helix destabilizing) protein with single-stranded nucleic acids

1 reference

12 December 2020

Large contributions of coupled protonation equilibria to the observed enthalpy and heat capacity changes for ssDNA binding to Escherichia coli SSB protein

1 reference

12 December 2020

Simplification of the empirical relationship between melting temperature of DNA, its GC content and concentration of sodium ions in solution

1 reference

12 December 2020

Interactions of bacteriophage T4-coded gene 32 protein with nucleic acids. II. Specificity of binding to DNA and RNA

1 reference

12 December 2020

A T7 amber mutant defective in DNA-binding protein

1 reference

12 December 2020

Slow relaxational processes in the melting of linear biopolymers: a theory and its application to nucleic acids

1 reference

12 December 2020

The effect of sequence heterogeneity on DNA melting kinetics

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKN551

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18772224%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18772224%20AND%20SRC:MED&resulttype=core&format=json

13 January 2020

1 reference