(Q36938008)

17 August 2017

title

Exploring fast computational strategies for probabilistic phylogenetic analysis (English)

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17 August 2017

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2

Hervé Philippe

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17 August 2017

Nicolas Rodrigue

1

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17 August 2017

Nicolas Lartillot

series ordinal

3

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17 August 2017

publication date

1 October 2007

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17 August 2017

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17 August 2017

volume

56

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17 August 2017

issue

5

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17 August 2017

page(s)

711-726

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A new look at the statistical model identification

17 August 2017

cites work

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Comparative performance of Bayesian and AIC-based measures of phylogenetic model uncertainty.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Lack of resolution in the animal phylogeny: closely spaced cladogeneses or undetected systematic errors?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

The Bayesian revolution in genetics

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A Bayesian compound stochastic process for modeling nonstationary and nonhomogeneous sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Bayesian computation: a statistical revolution.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Markov Chain Monte Carlo Convergence Diagnostics: A Comparative Review

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Evolutionary trees from DNA sequences: A maximum likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Phylogenies from molecular sequences: inference and reliability

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A Simple, Fast, and Accurate Algorithm to Estimate Large Phylogenies by Maximum Likelihood

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Monte Carlo sampling methods using Markov chains and their applications

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A Dirichlet process model for detecting positive selection in protein-coding DNA sequences.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A new approach to protein fold recognition

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Optimization by Simulated Annealing

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A maximum likelihood framework for protein design

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Performance of maximum parsimony and likelihood phylogenetics when evolution is heterogeneous

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Conjugate Gibbs sampling for Bayesian phylogenetic models.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Suppression of long-branch attraction artefacts in the animal phylogeny using a site-heterogeneous model

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A Bayesian mixture model for across-site heterogeneities in the amino-acid replacement process

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Computing Bayes factors using thermodynamic integration.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Parameter expansion to accelerate EM: the PX-EM algorithm

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Inferring complex DNA substitution processes on phylogenies using uniformization and data augmentation

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Equation of State Calculations by Fast Computing Machines

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A phylogenetic mixture model for detecting pattern-heterogeneity in gene sequence or character-state data

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

An integrated view of protein evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A dependent-rates model and an MCMC-based methodology for the maximum-likelihood analysis of sequences with overlapping reading frames.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Site-to-site variation of synonymous substitution rates

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

An empirical examination of the utility of codon-substitution models in phylogeny reconstruction

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Protein evolution with dependence among codons due to tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Assessing site-interdependent phylogenetic models of sequence evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Engineering of stable and fast-folding sequences of model proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Calculation of conformational ensembles from potentials of mean force. An approach to the knowledge-based prediction of local structures in globular proteins.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Should phylogenetic models be trying to "fit an elephant"?

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Designing amino acid sequences to fold with good hydrophobic cores

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Estimation of rates-across-sites distributions in phylogenetic substitution models

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Dependence among sites in RNA evolution

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

Testing for spatial clustering of amino acid replacements within protein tertiary structure.

21 January 2018

1 reference

https://api.crossref.org/works/10.1080%2F10635150701611258

10.1080/10635150701611258

21 January 2018

Identifiers

DOI

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17 August 2017

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