(Q36972796)

English

Replicating DNA by cell factories: roles of central carbon metabolism and transcription in the control of DNA replication in microbes, and implications for understanding this process in human cells

scientific article published on 29 May 2013

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

3 references

2 November 2019

4 November 2019

4 July 2020

Replicating DNA by cell factories: roles of central carbon metabolism and transcription in the control of DNA replication in microbes, and implications for understanding this process in human cells (English)

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

1 reference

2 November 2019

inorganic compound

1 reference

4 November 2019

1 reference

4 July 2020

Alicja Węgrzyn

7

object named as

Alicja Węgrzyn

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Grzegorz Węgrzyn

8

object named as

Grzegorz Węgrzyn

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Anna Herman-Antosiewicz

3

object named as

Anna Herman-Antosiewicz

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Agnieszka Szalewska-Pałasz

6

object named as

Agnieszka Szalewska-Pałasz

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Monika Maciąg-Dorszyńska

4

object named as

Monika Maciąg-Dorszyńska

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Sylwia Barańska

1

object named as

Sylwia Barańska

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

author name string

Monika Glinkowska

2

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Dariusz Nowicki

5

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

29 May 2013

4 references

Europe PubMed Central

PMC publication ID

17 August 2017

2 November 2019

4 November 2019

4 July 2020

Microbial Cell Factories

4 references

Europe PubMed Central

PMC publication ID

17 August 2017

2 November 2019

4 November 2019

4 July 2020

12

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

55

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

copyright license

Creative Commons Attribution 2.0 Generic

3 references

Europe PubMed Central

2 November 2019

Europe PubMed Central

4 November 2019

Europe PubMed Central

4 July 2020

copyright status

0 references

Different effects of ppGpp on Escherichia coli DNA replication in vivo and in vitro

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Dose-dependent reduction of replication elongation rate by (p)ppGpp in Escherichia coli and Bacillus subtilis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

ATAD5 regulates the lifespan of DNA replication factories by modulating PCNA level on the chromatin

1 reference

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29 September 2017

Spatio-temporal organization of replication in bacteria and eukaryotes (nucleoids and nuclei).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Control over DNA replication in time and space

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

1 reference

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29 September 2017

Binding Mechanism of Metal⋅NTP Substrates and Stringent-Response Alarmones to Bacterial DnaG-Type Primases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Replication-transcription conflicts in bacteria.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Mitochondrial transcription factor A regulates mitochondrial transcription initiation, DNA packaging, and genome copy number

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Phage λ--new insights into regulatory circuits

1 reference

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29 September 2017

Anticancer targets in the glycolytic metabolism of tumors: a comprehensive review

1 reference

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29 September 2017

Preferential localization of human origins of DNA replication at the 5'-ends of expressed genes and at evolutionarily conserved DNA sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Genetic response to metabolic fluctuations: correlation between central carbon metabolism and DNA replication in Escherichia coli

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Co-directional replication-transcription conflicts lead to replication restart

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Metabolism strikes back: metabolic flux regulates cell signaling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

DnaA and ORC: more than DNA replication initiators

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Network-based function prediction and interactomics: the case for metabolic enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

The pdh operon is expressed in a subpopulation of stationary-phase bacteria and is important for survival of sugar-starved Streptococcus mutans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

DnaA, ORC, and Cdc6: similarity beyond the domains of life and diversity.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Analysis of replication factories in human cells by super-resolution light microscopy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Eukaryotic DNA replication control: lock and load, then fire

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Mitochondrial DNA replication and repair: all a flap

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

The multiple facets of the intra-S checkpoint

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Inherited mitochondrial diseases of DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Mechanisms of physiological regulation of RNA synthesis in bacteria: new discoveries breaking old schemes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Molecular and structural transactions at human DNA replication origins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Genetic evidence for a link between glycolysis and DNA replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Regulation of the initiation of chromosomal replication in bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

The RNA degradosome of Escherichia coli: an mRNA-degrading machine assembled on RNase E.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Nutritional control of elongation of DNA replication by (p)ppGpp

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Alterations to the expression level of mitochondrial transcription factor A, TFAM, modify the mode of mitochondrial DNA replication in cultured human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Genetic switches during bacteriophage lambda development

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Multifaceted roles of glycolytic enzymes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Independence of replisomes in Escherichia coli chromosomal replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Architectural role of mitochondrial transcription factor A in maintenance of human mitochondrial DNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

An alternative strategy for bacterial ribosome synthesis: Bacillus subtilis rRNA transcription regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Regulation of mitochondrial transcription factor A expression by high glucose

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Stress responses and replication of plasmids in bacterial cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Mitochondrial transcription factor A (mtTFA) and diabetes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

A moving DNA replication factory in Caulobacter crescentus

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Inheritance of the replication complex: a unique or common phenomenon in the control of DNA replication?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Localization of bacterial DNA polymerase: evidence for a factory model of replication

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

DnaA-stimulated transcriptional activation of orilambda: Escherichia coli RNA polymerase beta subunit as a transcriptional activator contact site

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Mitochondrial transcription factor A is necessary for mtDNA maintenance and embryogenesis in mice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

On the structure of replication and transcription factories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Replication of coliphage lambda DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

DNA replication, the bacterial cell cycle, and cell growth

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

29 September 2017

Coupling of transcription and replication machineries in λ DNA replication initiation: evidence for direct interaction of Escherichia coli RNA polymerase and the λO protein

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Molecular mechanisms underlying the positive stringent response of the Bacillus subtilis ilv-leu operon, involved in the biosynthesis of branched-chain amino acids

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Composition of the lambda plasmid heritable replication complex

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Stabilization of the phospho-aspartyl residue in a two-component signal transduction system in Thermotoga maritima

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Stability of coliphage lambda DNA replication initiator, the lambda O protein.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Mouse L cell mitochondrial DNA molecules are selected randomly for replication throughout the cell cycle

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

27 June 2018

Mutations in central carbon metabolism genes suppress defects in nucleoid position and cell division of replication mutants in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Central carbon metabolism influences fidelity of DNA replication in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

ppGpp inhibits the activity of Escherichia coli DnaG primase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Plasmids derived from lambdoid bacteriophages as models for studying replication of mobile genetic elements responsible for the production of Shiga toxins by pathogenic Escherichia coli strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

DnaA protein interacts with RNA polymerase and partially protects it from the effect of rifampicin

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Independent positioning and action of Escherichia coli replisomes in live cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Replication fork and SeqA focus distributions in Escherichia coli suggest a replication hyperstructure dependent on nucleotide metabolism.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Mitochondrial transcription factor A regulates mtDNA copy number in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Replication factories

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Precise determinations of C and D periods by flow cytometry in Escherichia coli K-12 and B/r.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Initiation of DNA replication in delta cya mutants of Escherichia coli K12.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

ppGpp-mediated regulation of DNA replication and cell division in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

Effect of increased ppGpp concentration on DNA replication of different replicons in Escherichia coli.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3698200

4 September 2018

A novel role for cAMP in the control of the activity of the E. coli chromosome replication initiator protein, DnaA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The stringent response blocks DNA replication outside the ori region in Bacillus subtilis and at the origin in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Subcellular positioning of the origin region of the Bacillus subtilis chromosome is independent of sequences within oriC, the site of replication initiation, and the replication initiator DnaA

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Replication of plasmids derived from Shiga toxin-converting bacteriophages in starved Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Visualization of replication factories attached to nucleoskeleton

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Inheritance of the replication complex by one of two daughter copies during lambda plasmid replication in Escherichia coli

1 reference

https://pubmed.ncbi.nlm.nih.gov/23714207

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1475-2859-12-55

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Dimensions Publication ID

0 references

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

ResearchGate publication ID

0 references

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