(Q36976633)

17 August 2017

Interactions between amino acid side chains in cylindrical hydrophobic nanopores with applications to peptide stability (English)

1 reference

17 August 2017

1 reference

2

D Thirumalai

1 reference

17 August 2017

S Vaitheeswaran

1

1 reference

PMC publication ID

2584679

17 August 2017

language of work or name

English

0 references

publication date

12 November 2008

1 reference

Proceedings of the National Academy of Sciences of the United States of America

17 August 2017

1 reference

17 August 2017

105

1 reference

17 August 2017

46

1 reference

17 August 2017

17636-17641

1 reference

Factors governing helix formation in peptides confined to carbon nanotubes

17 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

How hydrophobic buckminsterfullerene affects surrounding water structure

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Protein folding under confinement: a role for solvent

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Ribosome exit tunnel can entropically stabilize alpha-helices

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Scalable molecular dynamics with NAMD

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Interactions of peptides with a protein pore

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Unfolding of Green Fluorescent Protein mut2 in wet nanoporous silica gels.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Water clusters in nonpolar cavities

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Simulations of beta-hairpin folding confined to spherical pores using distributed computing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Protein folding mediated by solvation: water expulsion and formation of the hydrophobic core occur after the structural collapse

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Crowding and hydration effects on protein conformation: a study with sol-gel encapsulated proteins.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Water conduction through the hydrophobic channel of a carbon nanotube

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Chaperonin-mediated protein folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Molecular confinement influences protein structure and enhances thermal protein stability

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Implications of macromolecular crowding for protein assembly.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Helix formation inside a nanotube: possible influence of backbone-water hydrogen bonding by the confining surface through modulation of water activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Hydrophobic and ionic interactions in nanosized water droplets.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Nanotube confinement denatures protein helices.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Nanopore-protein interactions dramatically alter stability and yield of the native state in restricted spaces.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Overcoming free energy barriers using unconstrained molecular dynamics simulations

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Nascent membrane and secretory proteins differ in FRET-detected folding far inside the ribosome and in their exposure to ribosomal proteins.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Dissecting the assembly of Abeta16-22 amyloid peptides into antiparallel beta sheets.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Extremely precise free energy calculations of amino acid side chain analogs: Comparison of common molecular mechanics force fields for proteins

4 September 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0803990105

CHARMM: A program for macromolecular energy, minimization, and dynamics calculations

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0803990105

Comparison of simple potential functions for simulating liquid water

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0803990105

Dynamics of Asp23-Lys28 salt-bridge formation in Abeta10-35 monomers

21 January 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2584679

Stabilization of Proteins in Confined Spaces†

20 October 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0803990105

21 January 2018

1 reference

12 December 2020

Protein encapsulation in mesoporous silicate: the effects of confinement on protein stability, hydration, and volumetric properties

1 reference

PubMed

12 December 2020

Protein stability in nanocages: a novel approach for influencing protein stability by molecular confinement

1 reference

PubMed

12 December 2020

Exploring the kinetic requirements for enhancement of protein folding rates in the GroEL cavity

1 reference

PubMed

12 December 2020

Identifiers

DOI

10.1073/PNAS.0803990105

1 reference

17 August 2017

0 references

1 reference

PMC publication ID

2584679

17 August 2017

PubMed publication ID

19004772

1 reference

PMC publication ID

2584679