(Q36986705)

English

The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components

scientific article published on 31 October 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

The Helicobacter pylori HpyAXII restriction-modification system limits exogenous DNA uptake by targeting GTAC sites but shows asymmetric conservation of the DNA methyltransferase and restriction endonuclease components (English)

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Helicobacter pylori

0 references

author name string

Olivier Humbert

1

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Nina R Salama

2

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

language of work or name

0 references

publication date

31 October 2008

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

36

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

21

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

6893-6906

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

Helicobacter pylori AddAB helicase-nuclease and RecA promote recombination-related DNA repair and survival during stomach colonization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

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Structural and evolutionary classification of Type II restriction enzymes based on theoretical and experimental analyses

1 reference

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Functional analysis of the M.HpyAIV DNA methyltransferase of Helicobacter pylori

1 reference

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1 reference

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Clustal W and Clustal X version 2.0

1 reference

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29 September 2017

Adaptive amplification

1 reference

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29 September 2017

Genomic methylation: a tool for typing Helicobacter pylori isolates.

1 reference

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Novel protein fold discovered in the PabI family of restriction enzymes

1 reference

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29 September 2017

REBASE--enzymes and genes for DNA restriction and modification

1 reference

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29 September 2017

Identification of Helicobacter pylori genes that contribute to stomach colonization

1 reference

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Epigenetic gene regulation in the bacterial world

1 reference

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29 September 2017

Pathogenesis of Helicobacter pylori infection

1 reference

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The complete genome sequence of a chronic atrophic gastritis Helicobacter pylori strain: evolution during disease progression

1 reference

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N6-methyl-adenine: an epigenetic signal for DNA-protein interactions

1 reference

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29 September 2017

Re-examining the role and random nature of phase variation

1 reference

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Genetic addiction: selfish gene's strategy for symbiosis in the genome

1 reference

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29 September 2017

Gain and loss of multiple genes during the evolution of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

Discordant 16S and 23S rRNA gene phylogenies for the genus Helicobacter: implications for phylogenetic inference and systematics

1 reference

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29 September 2017

Discovery of a novel restriction endonuclease by genome comparison and application of a wheat-germ-based cell-free translation assay: PabI (5'-GTA/C) from the hyperthermophilic archaeon Pyrococcus abyssi

1 reference

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29 September 2017

The biology of restriction and anti-restriction

1 reference

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29 September 2017

Isolation and characterization of a HpyC1I restriction-modification system in Helicobacter pylori.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

Analysis of bacterial RM-systems through genome-scale analysis and related taxonomy issues.

1 reference

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29 September 2017

A nomenclature for restriction enzymes, DNA methyltransferases, homing endonucleases and their genes

1 reference

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29 September 2017

Evolutionary implications of microbial genome tetranucleotide frequency biases

1 reference

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29 September 2017

Helicobacter pylori interstrain restriction-modification diversity prevents genome subversion by chromosomal DNA from competing strains

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

Evolutionary history of hrgA, which replaces the restriction gene hpyIIIR in the hpyIII locus of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

Transcriptional phase variation of a type III restriction-modification system in Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

A DNA methyltransferase can protect the genome from postdisturbance attack by a restriction-modification gene complex.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

29 September 2017

Phenotypic and genotypic variation in methylases involved in type II restriction-modification systems in Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

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Recombination and mutation during long-term gastric colonization by Helicobacter pylori: estimates of clock rates, recombination size, and minimal age.

1 reference

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Behavior of restriction-modification systems as selfish mobile elements and their impact on genome evolution

1 reference

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29 September 2017

Comparative genomics of the restriction-modification systems in Helicobacter pylori

1 reference

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Specificities of eleven different DNA methyltransferases of Helicobacter pylori strain 26695

1 reference

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Functional analysis of putative restriction-modification system genes in the Helicobacter pylori J99 genome

1 reference

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29 September 2017

Genomic-sequence comparison of two unrelated isolates of the human gastric pathogen Helicobacter pylori

1 reference

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The complete genome sequence of the gastric pathogen Helicobacter pylori

1 reference

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Introduction of unmarked mutations in the Helicobacter pylori vacA gene with a sucrose sensitivity marker

1 reference

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1 reference

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29 September 2017

Selfish behavior of restriction-modification systems

1 reference

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29 September 2017

A possible role for DNA restriction in bacterial evolution

1 reference

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29 September 2017

Over- and under-representation of short oligonucleotides in DNA sequences

1 reference

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29 September 2017

Avoidance of palindromic words in bacterial and archaeal genomes: a close connection with restriction enzymes

1 reference

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29 September 2017

Genetic organization and heterogeneity of the iceA locus of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

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Clinical relevance of the cagA, vacA, and iceA status of Helicobacter pylori

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

27 June 2018

Structure-guided analysis reveals nine sequence motifs conserved among DNA amino-methyltransferases, and suggests a catalytic mechanism for these enzymes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

27 June 2018

Clocks and switches: bacterial gene regulation by DNA adenine methylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2588503

4 September 2018

Maintenance of species identity and controlling speciation of bacteria: a new function for restriction/modification systems?

1 reference

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4 September 2018

Multiplication of a restriction-modification gene complex.

1 reference

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4 September 2018

Diversity of restriction-modification gene homologues in Helicobacter pylori.

1 reference

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4 September 2018

The Comprehensive Microbial Resource.

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4 September 2018

Restriction-modification system differences in Helicobacter pylori are a barrier to interstrain plasmid transfer.

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4 September 2018

Characteristics of Helicobacter pylori natural transformation.

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4 September 2018

Adherence to gastric epithelial cells induces expression of a Helicobacter pylori gene, iceA, that is associated with clinical outcome.

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4 September 2018

Transformation of Helicobacter pylori by chromosomal metronidazole resistance and by a plasmid with a selectable chloramphenicol resistance marker.

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4 September 2018

Gene conversion drives within genic sequences: concerted evolution of ribosomal RNA genes in bacteria and archaea

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https://pubmed.ncbi.nlm.nih.gov/18978016

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Comparison between Pyrococcus horikoshii and Pyrococcus abyssi genome sequences reveals linkage of restriction-modification genes with large genome polymorphisms

1 reference

https://pubmed.ncbi.nlm.nih.gov/18978016

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Experimental genome evolution: large-scale genome rearrangements associated with resistance to replacement of a chromosomal restriction-modification gene complex

1 reference

https://pubmed.ncbi.nlm.nih.gov/18978016

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A Helicobacter pylori restriction endonuclease-replacing gene, hrgA, is associated with gastric cancer in Asian strains

1 reference

https://pubmed.ncbi.nlm.nih.gov/18978016

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKN718

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

17 August 2017

ResearchGate publication ID

0 references

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