(Q36989080)

English

Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids

scientific article published on 08 July 2013

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scholarly article

1 reference

Europe PubMed Central

17 August 2017

Phylogenetic diversity and functional gene patterns of sulfur-oxidizing subseafloor Epsilonproteobacteria in diffuse hydrothermal vent fluids (English)

1 reference

Europe PubMed Central

17 August 2017

hydrothermal vent

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1 reference

based on heuristic

inferred from title

object named as

Julie A Huber

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David A. Butterfield

object named as

David A Butterfield

2

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author name string

Nancy H Akerman

1

1 reference

Europe PubMed Central

17 August 2017

publication date

8 July 2013

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Europe PubMed Central

17 August 2017

Frontiers in Microbiology

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Europe PubMed Central

17 August 2017

4

1 reference

Europe PubMed Central

17 August 2017

185

1 reference

Europe PubMed Central

17 August 2017

Microbiological characterization of post-eruption "snowblower" vents at Axial Seamount, Juan de Fuca Ridge.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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The microbiology of deep-sea hydrothermal vent plumes: ecological and biogeographic linkages to seafloor and water column habitats

1 reference

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Evidence for hydrogen oxidation and metabolic plasticity in widespread deep-sea sulfur-oxidizing bacteria

1 reference

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Evidence for niche partitioning revealed by the distribution of sulfur oxidation genes collected from areas of a terrestrial sulfidic spring with differing geochemical conditions

1 reference

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In situ chemistry and microbial community compositions in five deep-sea hydrothermal fluid samples from Irina II in the Logatchev field

1 reference

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Sulfur metabolizing microbes dominate microbial communities in Andesite-hosted shallow-sea hydrothermal systems

1 reference

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Microbial community structure across fluid gradients in the Juan de Fuca Ridge hydrothermal system

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Hydrogen-limited growth of hyperthermophilic methanogens at deep-sea hydrothermal vents

1 reference

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Draft genome sequence of the sulfur-oxidizing bacterium "Candidatus Sulfurovum sediminum" AR, which belongs to the Epsilonproteobacteria.

1 reference

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Prevalence of streptococci and increased polymicrobial diversity associated with cystic fibrosis patient stability

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Microbial ecology of expanding oxygen minimum zones

1 reference

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Genome and physiology of a model Epsilonproteobacterium responsible for sulfide detoxification in marine oxygen depletion zones

1 reference

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Sulfur metabolisms in epsilon- and gamma-proteobacteria in deep-sea hydrothermal fields

1 reference

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Potential for chemolithoautotrophy among ubiquitous bacteria lineages in the dark ocean.

1 reference

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Microbial ecology of the dark ocean above, at, and below the seafloor

1 reference

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Activity and distribution of thermophilic prokaryotes in hydrothermal fluid, sulfidic structures, and sheaths of alvinellids (East Pacific Rise, 13°N).

1 reference

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Complete genome sequence of Sulfurimonas autotrophica type strain (OK10).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Search and clustering orders of magnitude faster than BLAST

1 reference

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Isolated communities of Epsilonproteobacteria in hydrothermal vent fluids of the Mariana Arc seamounts

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Dormancy contributes to the maintenance of microbial diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

29 September 2017

Individual hydrothermal vents at Axial Seamount harbor distinct subseafloor microbial communities

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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iCODEHOP: a new interactive program for designing COnsensus-DEgenerate Hybrid Oligonucleotide Primers from multiply aligned protein sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Effect of PCR amplicon size on assessments of clone library microbial diversity and community structure

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Exploring microbial diversity and taxonomy using SSU rRNA hypervariable tag sequencing

1 reference

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Deep-sea vent chemoautotrophs: diversity, biochemistry and ecological significance

1 reference

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Genome of the Epsilonproteobacterial Chemolithoautotroph Sulfurimonas denitrificans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Quantitative distributions of Epsilonproteobacteria and a Sulfurimonas subgroup in pelagic redoxclines of the central Baltic Sea

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Molecular analysis of the diversity of sulfate-reducing and sulfur-oxidizing prokaryotes in the environment, using aprA as functional marker gene

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Microbial population structures in the deep marine biosphere

1 reference

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Deep-sea vent epsilon-proteobacterial genomes provide insights into emergence of pathogens

1 reference

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MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Sulfurimonas paralvinellae sp. nov., a novel mesophilic, hydrogen- and sulfur-oxidizing chemolithoautotroph within the Epsilonproteobacteria isolated from a deep-sea hydrothermal vent polychaete nest, reclassification of Thiomicrospira denitrificans

1 reference

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Microbial diversity in the deep sea and the underexplored "rare biosphere"

1 reference

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29 September 2017

The versatile epsilon-proteobacteria: key players in sulphidic habitats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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PriFi: using a multiple alignment of related sequences to find primers for amplification of homologs

1 reference

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Prokaryotic sulfur oxidation

1 reference

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Sulfurovum lithotrophicum gen. nov., sp. nov., a novel sulfur-oxidizing chemolithoautotroph within the -Proteobacteria isolated from Okinawa Trough hydrothermal sediments

1 reference

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Two bacteria phylotypes are predominant in the Suiyo seamount hydrothermal plume

1 reference

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1 reference

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Enzymology and molecular biology of prokaryotic sulfite oxidation.

1 reference

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Oxidation of reduced inorganic sulfur compounds by bacteria: emergence of a common mechanism?

1 reference

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EMBOSS: the European Molecular Biology Open Software Suite

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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1 reference

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Detoxification of sulphidic African shelf waters by blooming chemolithotrophs

1 reference

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Functional genes as markers for sulfur cycling and CO2 fixation in microbial communities of hydrothermal vents of the Logatchev field

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Metagenome of a versatile chemolithoautotroph from expanding oceanic dead zones

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

4 September 2018

Molecular analysis of the distribution and phylogeny of the soxB gene among sulfur-oxidizing bacteria - evolution of the Sox sulfur oxidation enzyme system.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Geomicrobiology of deep-sea hydrothermal vents

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Primaclade--a flexible tool to find conserved PCR primers across multiple species.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Geochemical constraints on chemolithoautotrophic metabolism by microorganisms in seafloor hydrothermal systems

1 reference

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3703533

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Molecular characterization of inorganic sulfur-compound metabolism in the deep-sea epsilonproteobacterium Sulfurovum sp. NBC37-1

1 reference

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20 October 2018

Identifiers

10.3389/FMICB.2013.00185

1 reference

Europe PubMed Central

17 August 2017

1 reference

Europe PubMed Central

17 August 2017

1 reference

Europe PubMed Central

17 August 2017

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