(Q37013090)

17 August 2017

Enhancer-promoter interactions are encoded by complex genomic signatures on looping chromatin (English)

1 reference

17 August 2017

3

Katherine S Pollard

1 reference

17 August 2017

Sean Whalen

1

1 reference

17 August 2017

Rebecca M Truty

series ordinal

2

1 reference

17 August 2017

language of work or name

English

0 references

publication date

4 April 2016

1 reference

17 August 2017

1 reference

17 August 2017

48

1 reference

17 August 2017

5

1 reference

17 August 2017

488-496

1 reference

https://scigraph.springernature.com/pub.10.1038/ng.3539

17 August 2017

0 references

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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29 September 2017

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A 3D map of the human genome at kilobase resolution reveals principles of chromatin looping

29 September 2017

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Enhancer variants: evaluating functions in common disease

29 September 2017

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Partitioning heritability of regulatory and cell-type-specific variants across 11 common diseases

29 September 2017

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Epigenetic control of hematopoiesis: the PU.1 chromatin connection.

29 September 2017

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Transcription factor binding predicts histone modifications in human cell lines

29 September 2017

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Candidate genes and functional noncoding variants identified in a canine model of obsessive-compulsive disorder

29 September 2017

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Checks and balances between cohesin and polycomb in gene silencing and transcription

29 September 2017

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Antagonistic actions of Rcor proteins regulate LSD1 activity and cellular differentiation

29 September 2017

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A general framework for estimating the relative pathogenicity of human genetic variants

29 September 2017

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Chromatin connectivity maps reveal dynamic promoter-enhancer long-range associations

29 September 2017

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Transcription factor binding in human cells occurs in dense clusters formed around cohesin anchor sites

29 September 2017

1 reference

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HCFC1 is a common component of active human CpG-island promoters and coincides with ZNF143, THAP11, YY1, and GABP transcription factor occupancy.

29 September 2017

1 reference

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DNA methylation of distal regulatory sites characterizes dysregulation of cancer genes

29 September 2017

1 reference

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Predicting spatial and temporal gene expression using an integrative model of transcription factor occupancy and chromatin state

29 September 2017

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Genomic variation and its impact on gene expression in Drosophila melanogaster

29 September 2017

1 reference

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Promoter-proximal pausing of RNA polymerase II: emerging roles in metazoans

29 September 2017

1 reference

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Annotation of functional variation in personal genomes using RegulomeDB

29 September 2017

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GENCODE: the reference human genome annotation for The ENCODE Project

29 September 2017

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Linking disease associations with regulatory information in the human genome

29 September 2017

1 reference

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The long-range interaction landscape of gene promoters

29 September 2017

1 reference

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The accessible chromatin landscape of the human genome

29 September 2017

1 reference

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An integrated encyclopedia of DNA elements in the human genome

29 September 2017

1 reference

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Classification of human genomic regions based on experimentally determined binding sites of more than 100 transcription-related factors

29 September 2017

1 reference

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Pioneer factors in hormone-dependent cancers

29 September 2017

1 reference

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Unsupervised pattern discovery in human chromatin structure through genomic segmentation

29 September 2017

1 reference

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Fast gapped-read alignment with Bowtie 2

29 September 2017

1 reference

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ChromHMM: automating chromatin-state discovery and characterization

29 September 2017

1 reference

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A decade of 3C technologies: insights into nuclear organization

29 September 2017

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HaploReg: a resource for exploring chromatin states, conservation, and regulatory motif alterations within sets of genetically linked variants

29 September 2017

1 reference

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A high-resolution map of human evolutionary constraint using 29 mammals

29 September 2017

1 reference

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Control of embryonic stem cell lineage commitment by core promoter factor, TAF3.

29 September 2017

1 reference

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Polycomb eviction as a new distant enhancer function.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Mapping and analysis of chromatin state dynamics in nine human cell types

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Selective targeting of histone methylation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

The Polycomb complex PRC2 and its mark in life

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Integrative analysis of genomic, functional and protein interaction data predicts long-range enhancer-target gene interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Accurate inference of transcription factor binding from DNA sequence and chromatin accessibility data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

The NIH Roadmap Epigenomics Mapping Consortium

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Regularization Paths for Generalized Linear Models via Coordinate Descent

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Sp1 regulates chromatin looping between an intronic enhancer and distal promoter of the human heme oxygenase-1 gene in renal cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

BEDTools: a flexible suite of utilities for comparing genomic features

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Human genetic variation recognizes functional elements in noncoding sequence

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

An abundance of ubiquitously expressed genes revealed by tissue transcriptome sequence data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Transcription factors mediate long-range enhancer-promoter interactions

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

An oestrogen-receptor-α-bound human chromatin interactome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Unlocking the secrets of the genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

A histone H3 lysine 36 trimethyltransferase links Nkx2-5 to Wolf-Hirschhorn syndrome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Human genetic variation and its contribution to complex traits

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

ChIP-seq accurately predicts tissue-specific activity of enhancers

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Model-based analysis of ChIP-Seq (MACS)

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

29 September 2017

What are decision trees?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

A HapMap harvest of insights into the genetics of common disease

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Differentially expressed genes are marked by histone 3 lysine 9 trimethylation in human cancer cells

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Chromosome Conformation Capture Carbon Copy (5C): a massively parallel solution for mapping interactions between genomic elements

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Transcriptional Regulatory Elements in the Human Genome

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

SUMO: a history of modification

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Role of histone H2A ubiquitination in Polycomb silencing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

NF-kappaB and AP-1 connection: mechanism of NF-kappaB-dependent regulation of AP-1 activity.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

hZimp10 is an androgen receptor co-activator and forms a complex with SUMO-1 at replication foci

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

A long-range Shh enhancer regulates expression in the developing limb and fin and is associated with preaxial polydactyly

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Recruitment of p300 by C/EBPbeta triggers phosphorylation of p300 and modulates coactivator activity

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

POU/TBP cooperativity: a mechanism for enhancer action from a distance

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

The core of the polycomb repressive complex is compositionally and functionally conserved in flies and humans

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

AP-1 as a regulator of cell life and death

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Selection bias in gene extraction on the basis of microarray gene-expression data

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Capturing chromosome conformation

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Ras regulates the association of serum response factor and CCAAT/enhancer-binding protein beta

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Spatial enhancer clustering and regulation of enhancer-proximal genes by cohesin

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Transcription factor and chromatin features predict genes associated with eQTLs

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Genome-scale functional characterization of Drosophila developmental enhancers in vivo

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

The CTCF insulator protein is posttranslationally modified by SUMO.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Whole-genome sequencing and variant discovery in C. elegans.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Conserved ETS domain arginines mediate DNA binding, nuclear localization, and a novel mode of bZIP interaction

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Going the distance: a current view of enhancer action

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4910881

Features of Arabidopsis genes and genome discovered using full-length cDNAs

4 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27064255

12 December 2020

inferred from PubMed ID database lookup

A Tutorial on Support Vector Machines for Pattern Recognition

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3539

7 January 2021

inferred from DOI database lookup

The Elements of Statistical Learning

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3539

7 January 2021

inferred from DOI database lookup

Gene Selection for Cancer Classification using Support Vector Machines

1 reference

Crossref

https://api.crossref.org/works/10.1038%2FNG.3539

7 January 2021

inferred from DOI database lookup

Identifiers

DOI

10.1038/NG.3539

1 reference

release_7eo3irpdlngj7ozql3ds3zqdum

17 August 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/7eo3irpdlngj7ozql3ds3zqdum

24 November 2022

mapped directly with Wikidata item

1 reference

17 August 2017

1 reference