(Q37049064)

17 August 2017

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title

Nuclear architecture and chromatin dynamics revealed by atomic force microscopy in combination with biochemistry and cell biology (English)

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17 August 2017

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Yasuhiro Hirano

1

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17 August 2017

Hirohide Takahashi

2

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17 August 2017

Masahiro Kumeta

3

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17 August 2017

Kohji Hizume

4

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17 August 2017

Yuya Hirai

5

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17 August 2017

Shotaro Otsuka

6

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17 August 2017

Shige H Yoshimura

7

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17 August 2017

Kunio Takeyasu

8

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17 August 2017

publication date

3 January 2008

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17 August 2017

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17 August 2017

volume

456

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17 August 2017

issue

1

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17 August 2017

page(s)

139-153

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describes a project that uses

17 August 2017

atomic force microscopy

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Visualization and analysis of chromatin by scanning force microscopy.

inferred from title

cites work

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Crossref

https://api.crossref.org/works/10.1007%2FS00424-007-0431-Z

Half a century of "the nuclear matrix"

21 January 2018

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Crossref

https://api.crossref.org/works/10.1007%2FS00424-007-0431-Z

Nucleolonema as a fundamental substructure of the nucleolus

21 January 2018

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12 December 2020

Pushing the envelope: structure, function, and dynamics of the nuclear periphery

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12 December 2020

Contributions of linker histones and histone H3 to chromatin structure: scanning force microscopy studies on trypsinized fibers

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12 December 2020

Organization of chromosomes in HeLa cells: isolation of histone-depleted nuclei and nuclear scaffolds.

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12 December 2020

Lamin a truncation in Hutchinson-Gilford progeria.

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12 December 2020

DNA topoisomerase II is required for condensation and separation of mitotic chromosomes in S. pombe

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12 December 2020

Nucleolar assembly of the rRNA processing machinery in living cells

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12 December 2020

Condensin architecture and interaction with DNA: regulatory non-SMC subunits bind to the head of SMC heterodimer

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12 December 2020

In situ localization of DNA topoisomerase II, a major polypeptide component of the Drosophila nuclear matrix fraction

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12 December 2020

Cadherin interaction probed by atomic force microscopy

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12 December 2020

Drastic change of local stiffness distribution correlating to cell migration in living fibroblasts

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12 December 2020

Atomic force microscope

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12 December 2020

Single-molecule recognition imaging microscopy

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12 December 2020

Genome architecture studied by nanoscale imaging: analyses among bacterial phyla and their implication to eukaryotic genome folding

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12 December 2020

ATP-dependent structural change of the eukaryotic clamp-loader protein, replication factor C.

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12 December 2020

Experimental observations of a nuclear matrix

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12 December 2020

Fast-scanning atomic force microscopy reveals the molecular mechanism of DNA cleavage by ApaI endonuclease

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12 December 2020

Weaving a pattern from disparate threads: lamin function in nuclear assembly and DNA replication

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12 December 2020

Tracking the interactions of rRNA processing proteins during nucleolar assembly in living cells.

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12 December 2020

DNA flexibility studied by covalent closure of short fragments into circles

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12 December 2020

Linker histone H1 per se can induce three-dimensional folding of chromatin fiber.

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12 December 2020

A Two-Step Scaffolding Model for Mitotic Chromosome Assembly

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12 December 2020

The structure of human metaphase chromosomes: its histological perspective and new horizons by atomic force microscopy

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12 December 2020

Proteomic analysis of the mammalian nuclear pore complex

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12 December 2020

Chromosome organization and chromatin modification: influence on genome function and evolution

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12 December 2020

Identification and characterization of a nuclear scaffold protein that binds the matrix attachment region DNA.

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12 December 2020

Recurrent de novo point mutations in lamin A cause Hutchinson–Gilford progeria syndrome

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12 December 2020

Scanning tunneling microscopy and atomic force microscopy: application to biology and technology

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12 December 2020

Unfolding mechanics of holo- and apocalmodulin studied by the atomic force microscope

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12 December 2020

The influence of DNA stiffness upon nucleosome formation

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12 December 2020

Cell-cycle-dependent dynamics of nuclear pores: pore-free islands and lamins.

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12 December 2020

Nucleolus: from structure to dynamics

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12 December 2020

Molecular structure of human topoisomerase II alpha revealed by atomic force microscopy

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12 December 2020

Topoisomerase II, scaffold component, promotes chromatin compaction in vitro in a linker-histone H1-dependent manner

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12 December 2020

Linker histone tails and N-tails of histone H3 are redundant: scanning force microscopy studies of reconstituted fibers

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12 December 2020

The FIS protein fails to block the binding of DnaA protein to oriC, the Escherichia coli chromosomal origin

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12 December 2020

SUN-domain proteins: 'Velcro' that links the nucleoskeleton to the cytoskeleton

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12 December 2020

Evidence for covalent modification of the nuclear dot-associated proteins PML and Sp100 by PIC1/SUMO-1

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12 December 2020

Dependence of diffusional mobility of integral inner nuclear membrane proteins on A-type lamins

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12 December 2020

Development of glutathione-coupled cantilever for the single-molecule force measurement by scanning force microscopy

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12 December 2020

Detection and localization of individual antibody-antigen recognition events by atomic force microscopy

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12 December 2020

The nuclear matrix: three-dimensional architecture and protein composition

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12 December 2020

Functional proteomic analysis of human nucleolus

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12 December 2020

Structure and mechanism of DNA topoisomerase II

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12 December 2020

Directed proteomic analysis of the human nucleolus

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12 December 2020

Atomic force microscopy proposes a novel model for stem-loop structure that binds a heat shock protein in the Staphylococcus aureus HSP70 operon.

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12 December 2020

The transcriptional role of PML and the nuclear body

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12 December 2020

The structure of DNA in the nucleosome core

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12 December 2020

Cyclin-dependent kinases govern formation and maintenance of the nucleolus

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12 December 2020

Intracellular trafficking of emerin, the Emery-Dreifuss muscular dystrophy protein

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12 December 2020

Role of SUMO-1-modified PML in nuclear body formation

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12 December 2020

Nano-mechanical methods in biochemistry using atomic force microscopy

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12 December 2020

Nuclear envelope assembly in Xenopus extracts visualized by scanning EM reveals a transport-dependent 'envelope smoothing' event

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12 December 2020

The three-dimensional organization of ribosomal genes and the architecture of the nucleoli vary with G1, S and G2 phases

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12 December 2020

Primary structure and binding activity of the hnRNP U protein: binding RNA through RGG box

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12 December 2020

Variations in the morphological patterns of "autoimmune" nuclear fluorescence

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12 December 2020

Histone core slips along DNA and prefers positioning at the chain end

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12 December 2020

Dynamic force spectroscopy of the digoxigenin-antibody complex

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12 December 2020

Nuclear pores collapse in response to CO2 imaged with atomic force microscopy.

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12 December 2020

The making of the mitotic chromosome: modern insights into classical questions

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12 December 2020

Nuclear membrane proteins with potential disease links found by subtractive proteomics

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12 December 2020

A three-dimensional approach to mitotic chromosome structure: evidence for a complex hierarchical organization

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12 December 2020

Diversity in nucleocytoplasmic transport pathways

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12 December 2020

Structure, function and assembly of the nucleolus.

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12 December 2020

Quantitative kinetic analysis of nucleolar breakdown and reassembly during mitosis in live human cells

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12 December 2020

The lamin B receptor (LBR) provides essential chromatin docking sites at the nuclear envelope

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12 December 2020

Ionic effects on the elasticity of single DNA molecules

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12 December 2020

A high-speed atomic force microscope for studying biological macromolecules.

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12 December 2020

Protein dynamics: implications for nuclear architecture and gene expression.

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12 December 2020

Assembly of chromatin fibers into metaphase chromosomes analyzed by transmission electron microscopy and scanning electron microscopy

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12 December 2020

AFM imaging of protein movements: histone H2A-H2B release during nucleosome remodeling

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12 December 2020

Atomic force microscopy proposes a 'kiss and pull' mechanism for enhancer function. off

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12 December 2020

Integral membrane proteins of the nuclear envelope interact with lamins and chromosomes, and binding is modulated by mitotic phosphorylation

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12 December 2020

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12 December 2020

Mapping the dynamic organization of the nuclear pore complex inside single living cells.

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12 December 2020

The yeast nuclear pore complex: composition, architecture, and transport mechanism

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12 December 2020

Participation of a fusogenic protein, glyceraldehyde-3-phosphate dehydrogenase, in nuclear membrane assembly

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12 December 2020

The chromatin structure of specific genes: I. Evidence for higher order domains of defined DNA sequence

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12 December 2020

Investigation of the flexibility of DNA using transient electric birefringence

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12 December 2020

Biomolecular imaging with the atomic force microscope

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12 December 2020

Negative supercoiling of DNA facilitates an interaction between transcription factor IID and the fibroin gene promoter

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12 December 2020

Human chromosome structure studied by scanning force microscopy after an enzymatic digestion of the covering cell material.

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12 December 2020

The nonchromatin substructures of the nucleus: the ribonucleoprotein (RNP)-containing and RNP-depleted matrices analyzed by sequential fractionation and resinless section electron microscopy

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12 December 2020

The rDNA transcription machinery is assembled during mitosis in active NORs and absent in inactive NORs

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12 December 2020

Atomic force microscopy demonstrates a critical role of DNA superhelicity in nucleosome dynamics.

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12 December 2020

Aldosterone and nuclear signaling in kidney

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12 December 2020

MAN1, an inner nuclear membrane protein that shares the LEM domain with lamina-associated polypeptide 2 and emerin

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12 December 2020

Chemically distinct transition states govern rapid dissociation of single L-selectin bonds under force

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12 December 2020

Probing protein-protein interactions in real time.

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12 December 2020

Condensins: organizing and segregating the genome

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12 December 2020

Contribution of cellular contractility to spatial and temporal variations in cellular stiffness.

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12 December 2020

Atomic force microscopy of mammalian sperm chromatin

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12 December 2020

The size of chromatin loops in HeLa cells

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12 December 2020

The nuclear membrane proteome: extending the envelope.

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12 December 2020

Atomic force microscopy with carbon nanotube probe resolves the subunit organization of protein complexes

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12 December 2020

The effects of DNA supercoiling on the expression of operons of the ilv regulon of Escherichia coli suggest a physiological rationale for divergently transcribed operons

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12 December 2020

Emerin, deficiency of which causes Emery-Dreifuss muscular dystrophy, is localized at the inner nuclear membrane

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12 December 2020

A new look at the nuclear matrix

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12 December 2020

Karyopherin flexibility in nucleocytoplasmic transport

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12 December 2020

Fast-scanning atomic force microscopy reveals the ATP/ADP-dependent conformational changes of GroEL.

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12 December 2020

Intracellular trafficking of MAN1, an integral protein of the nuclear envelope inner membrane

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12 December 2020

H-NS mediated compaction of DNA visualised by atomic force microscopy

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12 December 2020

Dynamic state of DNA topology is essential for genome condensation in bacteria.

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12 December 2020

Primary structure analysis and lamin B and DNA binding of human LBR, an integral protein of the nuclear envelope inner membrane

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12 December 2020

Nucleoid remodeling by an altered HU protein: reorganization of the transcription program

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12 December 2020

Toward mechanical manipulations of cell membranes and membrane proteins using an atomic force microscope: an invited review

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12 December 2020

Chromatin structure; oligomers of the histones

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12 December 2020

On-substrate lysis treatment combined with scanning probe microscopy revealed chromosome structures in eukaryotes and prokaryotes.

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12 December 2020

Regulation of p53 functions: let's meet at the nuclear bodies.

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12 December 2020

The nuclear lamina comes of age.

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12 December 2020

Influence of histone H1 on chromatin structure

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12 December 2020

Investigating the cytoskeleton of chicken cardiocytes with the atomic force microscope

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12 December 2020

Stretching DNA with optical tweezers

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12 December 2020

Chromatin Structure: A Repeating Unit of Histones and DNA

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12 December 2020

Nuclear membrane dynamics and reassembly in living cells: targeting of an inner nuclear membrane protein in interphase and mitosis

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12 December 2020

Chromosome territories, nuclear architecture and gene regulation in mammalian cells

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12 December 2020

The chromatin structure of specific genes: II. Disruption of chromatin structure during gene activity

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12 December 2020

Imaging nuclear pores of aldosterone-sensitive kidney cells by atomic force microscopy

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12 December 2020

Nucleolar nomenclature.

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12 December 2020

Involvement of histone H1 in the organization of the nucleosome and of the salt-dependent superstructures of chromatin

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12 December 2020

Distinct AAA-ATPase p97 complexes function in discrete steps of nuclear assembly.

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12 December 2020

The nuclear envelope: form and reformation

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12 December 2020

Dynamic interaction between BAF and emerin revealed by FRAP, FLIP, and FRET analyses in living HeLa cells

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12 December 2020

The nuclear pore complex as a transport machine.

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12 December 2020

Quantitative analysis of the transcription factor AP2 binding to DNA by atomic force microscopy

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12 December 2020

The function of PML in p53-dependent apoptosis

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12 December 2020

PML-nuclear bodies are involved in cellular serum response

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12 December 2020

DNA phase transition promoted by replication initiator

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12 December 2020

The importance of being knotted: effects of the C-terminal knot structure on enzymatic and mechanical properties of bovine carbonic anhydrase II

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12 December 2020

The nuclear lamina and its functions in the nucleus

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12 December 2020

Atomic force microscopy dissects the hierarchy of genome architectures in eukaryote, prokaryote, and chloroplast

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12 December 2020

Cellular roles of dna topoisomerases: a molecular perspective

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12 December 2020

CREB-binding protein (CBP)/p300 and RNA polymerase II colocalize in transcriptionally active domains in the nucleus

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12 December 2020

Nuclear pore complexes form immobile networks and have a very low turnover in live mammalian cells

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12 December 2020

A concerted DNA methylation/histone methylation switch regulates rRNA gene dosage control and nucleolar dominance

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12 December 2020

Cajal bodies: the first 100 years

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12 December 2020

In vivo analysis of Cajal body movement, separation, and joining in live human cells

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12 December 2020

Subcellular distribution and phosphorylation of the nuclear localization signal binding protein, NBP60

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12 December 2020

The conserved Nup107-160 complex is critical for nuclear pore complex assembly

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12 December 2020

An architectural role of the Escherichia coli chromatin protein FIS in organising DNA.

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12 December 2020

Pre-ribosomes on the road from the nucleolus to the cytoplasm

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12 December 2020

On the occurrence of a fibrous lamina on the inner aspect of the nuclear envelope in certain cells of vertebrates

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12 December 2020

Proteome analysis of human metaphase chromosomes.

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12 December 2020

Oriented binding of the His6-tagged carboxyl-tail of the L-type Ca2+ channel alpha1-subunit to a new NTA-functionalized self-assembled monolayer

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12 December 2020

Fast-scan atomic force microscopy reveals that the type III restriction enzyme EcoP15I is capable of DNA translocation and looping

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12 December 2020

Atomic force microscopy sees nucleosome positioning and histone H1-induced compaction in reconstituted chromatin

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12 December 2020

Mutations in the gene encoding the lamin B receptor produce an altered nuclear morphology in granulocytes (Pelger-Huët anomaly)

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12 December 2020

Nuclear speckles: a model for nuclear organelles

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12 December 2020

Drug-induced changes of cytoskeletal structure and mechanics in fibroblasts: an atomic force microscopy study

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12 December 2020

Functional architecture of the nucleus: organizing the regulatory machinery for gene expression, replication and repair.

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12 December 2020

Underwinding of DNA on binding of yeast TFIID to the TATA element

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12 December 2020

Breaking and making of the nuclear envelope

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12 December 2020

In vitro nuclear assembly with affinity-purified nuclear envelope precursor vesicle fractions, PV1 and PV2

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12 December 2020

10.1007/S00424-007-0431-Z

Identifiers

DOI

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17 August 2017

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