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Improved identification of conserved cassette exons using Bayesian networks.
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scholarly article
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
title
Improved identification of conserved cassette exons using Bayesian networks
(English)
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stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
main subject
Bayesian network
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author
Rileen Sinha
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1
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
Ulrike Gausmann
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4
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
Rolf Backofen
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6
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2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
author name string
Michael Hiller
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2
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2621368
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
Rainer Pudimat
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3
1 reference
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
Matthias Platzer
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5
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stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
publication date
12 November 2008
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
published in
BMC Bioinformatics
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PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
volume
9
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stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
page(s)
477
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Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
exact match
https://scigraph.springernature.com/pub.10.1186/1471-2105-9-477
0 references
cites work
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PubMed Central
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29 September 2017
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29 September 2017
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29 September 2017
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29 September 2017
Discovery and analysis of evolutionarily conserved intronic splicing regulatory elements
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29 September 2017
The emergence of alternative 3' and 5' splice site exons from constitutive exons
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Inference of splicing regulatory activities by sequence neighborhood analysis
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29 September 2017
Genomic splice-site analysis reveals frequent alternative splicing close to the dominant splice site.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Analysis of HIV-1 pol sequences using Bayesian Networks: implications for drug resistance
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29 September 2017
Using RNA secondary structures to guide sequence motif finding towards single-stranded regions
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PubMed Central
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29 September 2017
Alternative splicing: new insights from global analyses
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Thermodynamics of RNA-RNA binding
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29 September 2017
Non-EST based prediction of exon skipping and intron retention events using Pfam information
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29 September 2017
Recognition of unknown conserved alternatively spliced exons
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Bioinformatics analysis of alternative splicing
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Identification and analysis of alternative splicing events conserved in human and mouse
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Influence of RNA secondary structure on the pre-mRNA splicing process
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
A computational and experimental approach toward a priori identification of alternatively spliced exons
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29 September 2017
Widespread occurrence of alternative splicing at NAGNAG acceptors contributes to proteome plasticity
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29 September 2017
A non-EST-based method for exon-skipping prediction
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PubMed Central
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29 September 2017
Computational definition of sequence motifs governing constitutive exon splicing.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
The Bayesian revolution in genetics
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29 September 2017
Transcriptome and genome conservation of alternative splicing events in humans and mice.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
RNA folding in vivo
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PubMed Central
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29 September 2017
Predictive identification of exonic splicing enhancers in human genes
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Genome-wide detection of alternative splicing in expressed sequences of human genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Alternative splicing: increasing diversity in the proteomic world
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
The CELF family of RNA binding proteins is implicated in cell-specific and developmentally regulated alternative splicing
1 reference
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PubMed Central
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29 September 2017
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PubMed Central
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29 September 2017
Architectural limits on split genes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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29 September 2017
Differing patterns of selection in alternative and constitutive splice sites
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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27 June 2018
A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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27 June 2018
Non-EST-based prediction of novel alternatively spliced cassette exons with cell signaling function in Caenorhabditis elegans and human.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Inference in Bayesian networks.
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4 September 2018
Novel modes of splicing repression by PTB.
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4 September 2018
RASE: recognition of alternatively spliced exons in C.elegans.
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4 September 2018
A multiple-feature framework for modelling and predicting transcription factor binding sites.
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4 September 2018
Accurate identification of alternatively spliced exons using support vector machine.
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Prediction of splice sites with dependency graphs and their expanded bayesian networks.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Maximum entropy modeling of short sequence motifs with applications to RNA splicing signals.
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4 September 2018
Comparative analysis detects dependencies among the 5' splice-site positions
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Categorization and characterization of transcript-confirmed constitutively and alternatively spliced introns and exons from human
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Modeling splice sites with Bayes networks.
1 reference
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reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2621368
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4 September 2018
Alternative splicing of conserved exons is frequently species-specific in human and mouse
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19014490
retrieved
12 December 2020
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Identifiers
DOI
10.1186/1471-2105-9-477
1 reference
stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
DBLP publication ID
journals/bmcbi/SinhaHPGPB08
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
Dimensions Publication ID
1038563807
0 references
PMCID
2621368
1 reference
stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
PubMed ID
19014490
1 reference
stated in
Europe PubMed Central
PMCID
2621368
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19014490%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 January 2020
ResearchGate publication ID
23478746
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