(Q42738637)

English

A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing

scientific article published on 24 May 2007

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

A comprehensive computational characterization of conserved mammalian intronic sequences reveals conserved motifs associated with constitutive and alternative splicing (English)

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

alternative mRNA splicing, via spliceosome

1 reference

based on heuristic

inferred from title

author name string

Rodger B Voelker

1

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

J Andrew Berglund

2

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

publication date

24 May 2007

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

Genome Research

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

17

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

7

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

1023-1033

1 reference

Europe PubMed Central

PMC publication ID

6 November 2017

The RNA-binding protein Sam68 modulates the alternative splicing of Bcl-x

1 reference

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27 May 2018

Role for Fox-1/Fox-2 in mediating the neuronal pathway of calcitonin/calcitonin gene-related peptide alternative RNA processing

1 reference

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27 May 2018

Assessing the number of ancestral alternatively spliced exons in the human genome

1 reference

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27 May 2018

Functional variation and evolution of non-coding DNA.

1 reference

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27 May 2018

A nuclear function of Hu proteins as neuron-specific alternative RNA processing regulators

1 reference

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27 May 2018

RNA-dominant diseases

1 reference

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27 May 2018

CUG-BP1/CELF1 requires UGU-rich sequences for high-affinity binding

1 reference

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27 May 2018

Intronic alternative splicing regulators identified by comparative genomics in nematodes

1 reference

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27 May 2018

General and specific functions of exonic splicing silencers in splicing control

1 reference

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27 May 2018

Comparative analysis identifies exonic splicing regulatory sequences--The complex definition of enhancers and silencers

1 reference

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27 May 2018

Cryo-electron microscopy of spliceosomal components

1 reference

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27 May 2018

Fox-2 splicing factor binds to a conserved intron motif to promote inclusion of protein 4.1R alternative exon 16.

1 reference

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27 May 2018

The Muscleblind family of proteins: an emerging class of regulators of developmentally programmed alternative splicing

1 reference

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27 May 2018

Mammalian CELF/Bruno-like RNA-binding proteins: molecular characteristics and biological functions

1 reference

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27 May 2018

Fox-2 mediates epithelial cell-specific fibroblast growth factor receptor 2 exon choice

1 reference

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27 May 2018

Unusual intron conservation near tissue-regulated exons found by splicing microarrays

1 reference

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27 May 2018

AU-rich elements and associated factors: are there unifying principles?

1 reference

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27 May 2018

The architecture of pre-mRNAs affects mechanisms of splice-site pairing.

1 reference

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27 May 2018

A mutational analysis of U12-dependent splice site dinucleotides

1 reference

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27 May 2018

Target RNA motif and target mRNAs of the Quaking STAR protein

1 reference

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27 May 2018

Understanding alternative splicing: towards a cellular code

1 reference

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27 May 2018

Nova autoregulation reveals dual functions in neuronal splicing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899113

27 May 2018

Silencers regulate both constitutive and alternative splicing events in mammals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1899113

27 May 2018

Tissue-dependent isoforms of mammalian Fox-1 homologs are associated with tissue-specific splicing activities

1 reference

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27 May 2018

Conserved non-genic sequences - an unexpected feature of mammalian genomes

1 reference

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27 May 2018

Identification and analysis of alternative splicing events conserved in human and mouse

1 reference

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27 May 2018

The splicing regulatory element, UGCAUG, is phylogenetically and spatially conserved in introns that flank tissue-specific alternative exons

1 reference

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27 May 2018

Assessing computational tools for the discovery of transcription factor binding sites

1 reference

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NCBI Reference Sequence (RefSeq): a curated non-redundant sequence database of genomes, transcripts and proteins

1 reference

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27 May 2018

Systematic identification and analysis of exonic splicing silencers.

1 reference

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27 May 2018

Variation in sequence and organization of splicing regulatory elements in vertebrate genes

1 reference

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Specificity of the STAR/GSG domain protein Qk1: implications for the regulation of myelination

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27 May 2018

Muscleblind proteins regulate alternative splicing

1 reference

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27 May 2018

Computational definition of sequence motifs governing constitutive exon splicing.

1 reference

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27 May 2018

Regulation of alternative RNA splicing by exon definition and exon sequences in viral and mammalian gene expression

1 reference

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27 May 2018

Transcriptome and genome conservation of alternative splicing events in humans and mice.

1 reference

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27 May 2018

Sequence information for the splicing of human pre-mRNA identified by support vector machine classification

1 reference

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27 May 2018

Genomic regulatory regions: insights from comparative sequence analysis

1 reference

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27 May 2018

CLIP identifies Nova-regulated RNA networks in the brain

1 reference

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27 May 2018

U1 snRNP-dependent function of TIAR in the regulation of alternative RNA processing of the human calcitonin/CGRP pre-mRNA

1 reference

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27 May 2018

Intronic sequences flanking alternatively spliced exons are conserved between human and mouse

1 reference

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27 May 2018

Nova regulates GABA(A) receptor gamma2 alternative splicing via a distal downstream UCAU-rich intronic splicing enhancer

1 reference

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27 May 2018

Pre-mRNA splicing and human disease

1 reference

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27 May 2018

A vertebrate RNA-binding protein Fox-1 regulates tissue-specific splicing via the pentanucleotide GCAUG.

1 reference

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27 May 2018

Identification of cellular mRNA targets for RNA-binding protein Sam68

1 reference

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27 May 2018

Signal-dependent regulation of splicing via phosphorylation of Sam68

1 reference

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27 May 2018

Allosteric cascade of spliceosome activation

1 reference

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Finding signals that regulate alternative splicing in the post-genomic era

1 reference

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27 May 2018

Predictive identification of exonic splicing enhancers in human genes

1 reference

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27 May 2018

The human genome browser at UCSC

1 reference

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27 May 2018

Listening to silence and understanding nonsense: exonic mutations that affect splicing

1 reference

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27 May 2018

Function of quaking in myelination: regulation of alternative splicing

1 reference

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27 May 2018

TIA-1 and TIAR activate splicing of alternative exons with weak 5' splice sites followed by a U-rich stretch on their own pre-mRNAs

1 reference

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27 May 2018

Computational analysis of candidate intron regulatory elements for tissue-specific alternative pre-mRNA splicing

1 reference

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27 May 2018

Comparison of intron-containing and intron-lacking human genes elucidates putative exonic splicing enhancers

1 reference

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27 May 2018

The apoptosis-promoting factor TIA-1 is a regulator of alternative pre-mRNA splicing

1 reference

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27 May 2018

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1 reference

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The tetranucleotide UCAY directs the specific recognition of RNA by the Nova K-homology 3 domain

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27 May 2018

Nova-1 regulates neuron-specific alternative splicing and is essential for neuronal viability

1 reference

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Exonic splicing enhancers: mechanism of action, diversity and role in human genetic diseases

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27 May 2018

The KH domain of the branchpoint sequence binding protein determines specificity for the pre-mRNA branchpoint sequence

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Alternative splicing of the fibronectin EIIIB exon depends on specific TGCATG repeats

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A cooperative interaction between U2AF65 and mBBP/SF1 facilitates branchpoint region recognition

1 reference

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27 May 2018

Classification of introns: U2-type or U12-type

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Specificity and determinants of Sam68 RNA binding. Implications for the biological function of K homology domains

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27 May 2018

The splicing factor BBP interacts specifically with the pre-mRNA branchpoint sequence UACUAAC.

1 reference

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27 May 2018

Individual RNA recognition motifs of TIA-1 and TIAR have different RNA binding specificities

1 reference

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27 May 2018

An intron enhancer containing a 5' splice site sequence in the human calcitonin/calcitonin gene-related peptide gene

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27 May 2018

Regulation of alternative pre-mRNA splicing by a novel repeated hexanucleotide element.

1 reference

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An RNA map predicting Nova-dependent splicing regulation

1 reference

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Analysis of intronic conserved elements indicates that functional complexity might represent a major source of negative selection on non-coding sequences

1 reference

https://pubmed.ncbi.nlm.nih.gov/17525134

12 December 2020

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An extended RNA binding site for the yeast branch point-binding protein and the role of its zinc knuckle domains in RNA binding

1 reference

https://pubmed.ncbi.nlm.nih.gov/17525134

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

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10.1101/GR.6017807

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Europe PubMed Central

PMC publication ID

6 November 2017

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24 November 2022

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Europe PubMed Central

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6 November 2017

PubMed publication ID

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Europe PubMed Central

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