(Q37077722)

18 August 2017

Two distinct binding modes of a protein cofactor with its target RNA. (English)

1 reference

18 August 2017

7

Xiaowei Zhuang

1 reference

18 August 2017

Gregory Bokinsky

1

1 reference

18 August 2017

Lucas G Nivón

2

1 reference

18 August 2017

Shixin Liu

3

1 reference

18 August 2017

Geqing Chai

4

1 reference

18 August 2017

Minh Hong

5

1 reference

18 August 2017

Kevin M Weeks

6

1 reference

18 August 2017

language of work or name

English

0 references

publication date

7 July 2006

1 reference

Journal of Molecular Biology

18 August 2017

1 reference

18 August 2017

361

1 reference

18 August 2017

4

1 reference

18 August 2017

771-784

1 reference

Single-molecule studies highlight conformational heterogeneity in the early folding steps of a large ribozyme

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Roles of protein subunits in RNA-protein complexes: lessons from ribonuclease P.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

A four-way junction accelerates hairpin ribozyme folding via a discrete intermediate

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Identifying kinetic barriers to mechanical unfolding of the T. thermophila ribozyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Correlating structural dynamics and function in single ribozyme molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Messenger-RNA-binding proteins and the messages they carry

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

A novel mechanism for protein-assisted group I intron splicing.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Beyond kinetic traps in RNA folding

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Measuring conformational dynamics of biomolecules by single molecule fluorescence spectroscopy

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

An RNA binding motif in the Cbp2 protein required for protein-stimulated RNA catalysis.

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

New pathways in folding of the Tetrahymena group I RNA enzyme

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Ligand-induced conformational changes observed in single RNA molecules

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Assembly of a ribonucleoprotein catalyst by tertiary structure capture

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Dissection of the role of the conserved G.U pair in group I RNA self-splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Protein facilitation of group I intron splicing by assembly of the catalytic core and the 5' splice site domain

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

RNA chaperones and the RNA folding problem

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Efficient protein-facilitated splicing of the yeast mitochondrial bI5 intron

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

In vitro splicing of the terminal intervening sequence of Saccharomyces cerevisiae cytochrome b pre-mRNA

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

A DEAD-box protein functions as an ATP-dependent RNA chaperone in group I intron splicing

29 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Protein-facilitated RNA folding

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Escherichia coli proteins, including ribosomal protein S12, facilitate in vitro splicing of phage T4 introns by acting as RNA chaperones

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Differential helix stabilities and sites pre-organized for tertiary interactions revealed by monitoring local nucleotide flexibility in the bI5 group I intron RNA.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

A comprehensive characterization of a group IB intron and its encoded maturase reveals that protein-assisted splicing requires an almost intact intron RNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Fluorescence resonance energy transfer

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Protein-induced folding of a group I intron in cytochrome b pre-mRNA.

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

Folding intermediates of a self-splicing RNA: mispairing of the catalytic core

4 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2633024

A collapsed state functions to self-chaperone RNA folding into a native ribonucleoprotein complex

4 December 2018

1 reference

12 December 2020

Single-Molecule Measurement of Protein Folding Kinetics

1 reference

12 December 2020

Near native structure in an RNA collapsed state

1 reference

12 December 2020

A tyrosyl-tRNA synthetase protein induces tertiary folding of the group I intron catalytic core

1 reference

12 December 2020

A tyrosyl-tRNA synthetase recognizes a conserved tRNA-like structural motif in the group I intron catalytic core

1 reference

12 December 2020

Intermediates and kinetic traps in the folding of a large ribozyme revealed by circular dichroism and UV absorbance spectroscopies and catalytic activity

1 reference

12 December 2020

RNA Folding at Millisecond Intervals by Synchrotron Hydroxyl Radical Footprinting

1 reference

12 December 2020

Kinetic intermediates trapped by native interactions in RNA folding

1 reference

12 December 2020

Structural basis for the self-chaperoning function of an RNA collapsed state

1 reference

12 December 2020

Evidence for non-two-state kinetics in the nucleocapsid protein chaperoned opening of DNA hairpins

1 reference

12 December 2020

A collapsed non-native RNA folding state

1 reference

12 December 2020

A Single-Molecule Study of RNA Catalysis and Folding

1 reference

12 December 2020

Protein-dependent transition states for ribonucleoprotein assembly

1 reference

12 December 2020

10.1016/J.JMB.2006.06.048

Identifiers

DOI

1 reference

18 August 2017

1 reference

18 August 2017

PubMed publication ID

16872630

1 reference