(Q37082884)

English

Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA

scientific article published on 06 October 2011

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease (RNase-detected SHAPE) for direct analysis of covalent adducts and of nucleotide flexibility in RNA (English)

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1 reference

based on heuristic

inferred from title

author name string

Kady-Ann Steen

1

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Nathan A Siegfried

2

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Kevin M Weeks

3

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

language of work or name

1 reference

based on heuristic

inferred from title

publication date

6 October 2011

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Nature Protocols

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

6

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1683-1694

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Exploring RNA structural codes with SHAPE chemistry

1 reference

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1 reference

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29 September 2017

High-throughput SHAPE and hydroxyl radical analysis of RNA structure and ribonucleoprotein assembly

1 reference

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29 September 2017

Selective 2'-hydroxyl acylation analyzed by protection from exoribonuclease

1 reference

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Nonhierarchical ribonucleoprotein assembly suggests a strain-propagation model for protein-facilitated RNA folding

1 reference

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Advances in RNA structure analysis by chemical probing

1 reference

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Thermodynamic analysis of ligand binding and ligand binding-induced tertiary structure formation by the thiamine pyrophosphate riboswitch

1 reference

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Architecture and secondary structure of an entire HIV-1 RNA genome

1 reference

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Influence of nucleotide identity on ribose 2'-hydroxyl reactivity in RNA

1 reference

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Insights into how RNase R degrades structured RNA: analysis of the nuclease domain

1 reference

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Accurate SHAPE-directed RNA structure determination

1 reference

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The roles of individual domains of RNase R in substrate binding and exoribonuclease activity. The nuclease domain is sufficient for digestion of structured RNA

1 reference

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How RNA unfolds and refolds

1 reference

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1 reference

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29 September 2017

High-throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

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Structure of the active subunit of the yeast exosome core, Rrp44: diverse modes of substrate recruitment in the RNase II nuclease family

1 reference

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I-TASSER server for protein 3D structure prediction

1 reference

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Selective 2'-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

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Structural basis for gene regulation by a thiamine pyrophosphate-sensing riboswitch

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

RNA structure analysis at single nucleotide resolution by selective 2'-hydroxyl acylation and primer extension (SHAPE)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

SAFA: semi-automated footprinting analysis software for high-throughput quantification of nucleic acid footprinting experiments

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

Probing RNA structure and RNA-ligand complexes with chemical probes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

Probing the structure of RNAs in solution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

29 September 2017

Determination of key residues for catalysis and RNA cleavage specificity: one mutation turns RNase II into a "SUPER-ENZYME".

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

27 June 2018

Strong correlation between SHAPE chemistry and the generalized NMR order parameter (S2) in RNA

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4940041

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Exoribonuclease R in Mycoplasma genitalium can carry out both RNA processing and degradative functions and is sensitive to RNA ribose methylation.

1 reference

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27 June 2018

Structural analysis of RNA using chemical and enzymatic probing monitored by primer extension

1 reference

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RNase R mutants elucidate the catalysis of structured RNA: RNA-binding domains select the RNAs targeted for degradation.

1 reference

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Time-resolved RNA SHAPE chemistry

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Slow conformational dynamics at C2'-endo nucleotides in RNA.

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Complex ligand-induced conformational changes in tRNA(Asp) revealed by single-nucleotide resolution SHAPE chemistry

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Unravelling the dynamics of RNA degradation by ribonuclease II and its RNA-bound complex.

1 reference

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RNA SHAPE chemistry reveals nonhierarchical interactions dominate equilibrium structural transitions in tRNA(Asp) transcripts

1 reference

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Tricine-SDS-PAGE.

1 reference

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21 January 2018

Site-specific labeling of RNA with fluorophores and other structural probes

1 reference

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Spatial organization of template polynucleotides on the ribosome determined by fluorescence methods

1 reference

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31 March 2020

Identifiers

10.1038/NPROT.2011.373

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

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