Home
Random
Nearby
Log in
Settings
Donate
About Wikidata
Disclaimers
Search
(Q37112754)
Watch
English
BioTagger-GM: a gene/protein name recognition system.
scientific article published on 11 December 2008
In more languages
edit
Statements
instance of
scholarly article
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
title
BioTagger-GM: a gene/protein name recognition system
(English)
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
author
Manabu Torii
series ordinal
1
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Hongfang Liu
series ordinal
4
object named as
Hongfang Liu
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Cathy H. Wu
series ordinal
3
object named as
Cathy H Wu
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
author name string
Zhangzhi Hu
series ordinal
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
publication date
11 December 2008
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
published in
Journal of the American Medical Informatics Association
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
volume
16
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
issue
2
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
page(s)
247-255
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
cites work
Overview of BioCreative II gene mention recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
BANNER: an executable survey of advances in biomedical named entity recognition.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
High-recall protein entity recognition using a dictionary
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
Identifying gene and protein mentions in text using conditional random fields
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
GENETAG: a tagged corpus for gene/protein named entity recognition
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
BioCreAtIvE task 1A: gene mention finding evaluation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
ABNER: an open source tool for automatically tagging genes, proteins and other entity names in text
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
The Universal Protein Resource (UniProt)
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
Automatic extraction of gene/protein biological functions from biomedical text
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
NLProt: extracting protein names and sequences from papers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
The iProClass integrated database for protein functional analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
GeneWays: a system for extracting, analyzing, visualizing, and integrating molecular pathway data
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
The Unified Medical Language System (UMLS): integrating biomedical terminology
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
A simple algorithm for identifying abbreviation definitions in biomedical text.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
Playing biology's name game: identifying protein names in scientific text.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
PIES, a protein interaction extraction system.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
A pragmatic information extraction strategy for gathering data on genetic interactions.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
EDGAR: extraction of drugs, genes and relations from the biomedical literature
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
Two applications of information extraction to biological science journal articles: enzyme interactions and protein structures.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
14 September 2017
A simple and practical dictionary-based approach for identification of proteins in Medline abstracts
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
29 September 2017
Toward information extraction: identifying protein names from biological papers.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
27 June 2018
Learning string similarity measures for gene/protein name dictionary look-up using logistic regression.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
Improving the performance of dictionary-based approaches in protein name recognition.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
GAPSCORE: finding gene and protein names one word at a time
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
A biological named entity recognizer.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
Protein names and how to find them.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
Event extraction from biomedical papers using a full parser.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2649315
retrieved
3 September 2018
A highly sensitive selection method for directed evolution of homing endonucleases
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1197%2FJAMIA.M2844
retrieved
21 January 2018
TMB-Hunt: an amino acid composition based method to screen proteomes for beta-barrel transmembrane proteins
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1197%2FJAMIA.M2844
retrieved
21 January 2018
Automatic extraction of protein interactions from scientific abstracts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19074302
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Toward Routine Automatic Pathway Discovery from On-line Scientific Text Abstracts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19074302
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifying the Interaction between Genes and Gene Products Based on Frequently Seen Verbs in Medline Abstracts
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19074302
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
BioThesaurus: a web-based thesaurus of protein and gene names
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/19074302
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1197/JAMIA.M2844
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
DBLP publication ID
journals/jamia/ToriiHWL09
1 reference
stated in
DBLP Dataset 2021-01-02
retrieved
28 January 2021
PMC publication ID
2649315
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
PubMed publication ID
19074302
1 reference
stated in
Europe PubMed Central
PMC publication ID
2649315
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19074302%20AND%20SRC:MED&resulttype=core&format=json
retrieved
18 January 2020
Sitelinks
Wikipedia
(0 entries)
edit
Wikibooks
(0 entries)
edit
Wikinews
(0 entries)
edit
Wikiquote
(0 entries)
edit
Wikisource
(0 entries)
edit
Wikiversity
(0 entries)
edit
Wikivoyage
(0 entries)
edit
Wiktionary
(0 entries)
edit
Multilingual sites
(0 entries)
edit
