(Q37114735)

18 August 2017

Inherent flexibility determines the transition mechanisms of the EF-hands of calmodulin (English)

1 reference

18 August 2017

Swarnendu Tripathi

1

1 reference

18 August 2017

John J Portman

series ordinal

2

1 reference

18 August 2017

language of work or name

English

0 references

publication date

3 February 2009

1 reference

Proceedings of the National Academy of Sciences of the United States of America

18 August 2017

1 reference

18 August 2017

106

1 reference

18 August 2017

7

1 reference

18 August 2017

2104-2109

1 reference

Coarse-grained free energy functions for studying protein conformational changes: a double-well network model

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Calcium-induced folding of a fragment of calmodulin composed of EF-hands 2 and 3

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Establishing the entatic state in folding metallated Pseudomonas aeruginosa azurin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Conformational transitions of adenylate kinase: switching by cracking

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Multiple-basin energy landscapes for large-amplitude conformational motions of proteins: Structure-based molecular dynamics simulations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Calmodulin's flexibility allows for promiscuity in its interactions with target proteins and peptides

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Theory of protein folding

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Nonlinear elasticity, proteinquakes, and the energy landscapes of functional transitions in proteins

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Dynamics of Ca2+-saturated calmodulin D129N mutant studied by multiple molecular dynamics simulations

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Solution structure of Ca(2+)-calmodulin reveals flexible hand-like properties of its domains

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Functional dynamics of the hydrophobic cleft in the N-domain of calmodulin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Ligand binding and thermodynamic stability of a multidomain protein, calmodulin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Target recognition by calmodulin: dissecting the kinetics and affinity of interaction using short peptide sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

VMD: visual molecular dynamics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Modulation of calmodulin plasticity in molecular recognition on the basis of x-ray structures

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Funnels, pathways, and the energy landscape of protein folding: a synthesis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Solution structure of calcium-free calmodulin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Thermodynamic study of domain organization in troponin C and calmodulin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Three-dimensional structure of calmodulin

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Evolution of EF-hand calcium-modulated proteins. II. Domains of several subfamilies have diverse evolutionary histories

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Calmodulin structure refined at 1.7 A resolution

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Efficient generation of feasible pathways for protein conformational transitions

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Single molecule conformational dynamics of adenylate kinase: energy landscape, structural correlations, and transition state ensembles

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Large amplitude conformational change in proteins explored with a plastic network model: adenylate kinase

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Dynamics of the transition between open and closed conformations in a calmodulin C-terminal domain mutant.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Specificity and symmetry in the interaction of calmodulin domains with the skeletal muscle myosin light chain kinase target sequence.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Bending of the calmodulin central helix: a theoretical study

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Ligand binding and internal equilibiums in proteins

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Backbone dynamics of calmodulin studied by 15N relaxation using inverse detected two-dimensional NMR spectroscopy: the central helix is flexible.

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Inherent flexibility and protein function: The open/closed conformational transition in the N-terminal domain of calmodulin

27 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Simple energy landscape model for the kinetics of functional transitions in proteins

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Residue-residue potentials with a favorable contact pair term and an unfavorable high packing density term, for simulation and threading.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2650115

Microscopic theory of protein folding rates. I. Fine structure of the free energy profile and folding routes from a variational approach

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0806872106

Slow Protein Conformational Dynamics from Multiple Experimental Structures: The Helix/Sheet Transition of Arc Repressor

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0806872106

Slow Conformational Dynamics and Unfolding of the Calmodulin C-Terminal Domain

21 January 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0806872106

Temperature jump kinetic study of the stability of apo-calmodulin

21 January 2018

1 reference

12 December 2020

Calcium binding to calmodulin and its globular domains

1 reference

12 December 2020

Rotational Dynamics of Calcium-Free Calmodulin Studied by 15N-NMR Relaxation Measurements

1 reference

12 December 2020

Backbone dynamics and energetics of a calmodulin domain mutant exchanging between closed and open conformations

1 reference

12 December 2020

Peptide binding by a fragment of calmodulin composed of EF-hands 2 and 3

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.0806872106

1 reference

release_6rbxbkcdubharmcdpim6xn5hmm

18 August 2017

0 references

1 reference

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/6rbxbkcdubharmcdpim6xn5hmm

24 November 2022

mapped directly with Wikidata item

1 reference

18 August 2017

PubMed publication ID

19190183

1 reference