(Q37117001)

English

Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis

scientific article published on 22 December 2008

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Multilocus patterns of nucleotide diversity, population structure and linkage disequilibrium in Boechera stricta, a wild relative of Arabidopsis (English)

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1 reference

based on heuristic

inferred from title

population structure

1 reference

based on heuristic

inferred from title

linkage disequilibrium

1 reference

based on heuristic

inferred from title

Thomas Mitchell-Olds

7

object named as

Thomas Mitchell-Olds

0 references

Bao-Hua (Alysa) Song

1

object named as

Bao-Hua Song

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

author name string

Aaron J Windsor

2

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Karl J Schmid

3

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Sebastian Ramos-Onsins

4

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

M Eric Schranz

5

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Andrew J Heidel

6

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

Thomas Mitchell-Olds

7

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Europe PubMed Central

PMC publication ID

18 August 2017

language of work or name

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publication date

22 December 2008

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Europe PubMed Central

PMC publication ID

18 August 2017

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Europe PubMed Central

PMC publication ID

18 August 2017

181

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Europe PubMed Central

PMC publication ID

18 August 2017

3

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

1021-1033

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

GenAlEx 6.5: genetic analysis in Excel. Population genetic software for teaching and research--an update

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Measuring the prevalence of regional mutation rates: an analysis of silent substitutions in mammals, fungi, and insects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Patterns of polymorphism and demographic history in natural populations of Arabidopsis lyrata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Linkage disequilibrium--understanding the evolutionary past and mapping the medical future

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

The extent of linkage disequilibrium in rice (Oryza sativa L.).

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Which evolutionary processes influence natural genetic variation for phenotypic traits?

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Genome-wide patterns of nucleotide polymorphism in domesticated rice

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Diploid apomicts of the Boechera holboellii complex display large-scale chromosome substitutions and aberrant chromosomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Recombination and linkage disequilibrium in Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

The Evolution of Selfing in Arabidopsis thaliana

1 reference

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14 September 2017

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

1 reference

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14 September 2017

Population structure and its effects on patterns of nucleotide polymorphism in teosinte (Zea mays ssp. parviglumis)

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

A Markov chain Monte Carlo approach for joint inference of population structure and inbreeding rates from multilocus genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Comparative genetic mapping in Boechera stricta, a close relative of Arabidopsis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Comparative genomics in the Brassicaceae: a family-wide perspective

1 reference

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14 September 2017

Multilocus patterns of nucleotide diversity, linkage disequilibrium and demographic history of Norway spruce [Picea abies (L.) Karst]

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Interference among deleterious mutations favours sex and recombination in finite populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Testing for effects of recombination rate on nucleotide diversity in natural populations of Arabidopsis lyrata.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Distribution of genetic variation within and among local populations of Arabidopsis thaliana over its species range.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Expression profiling and local adaptation of Boechera holboellii populations for water use efficiency across a naturally occurring water stress gradient

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Estimating the contribution of mutation, recombination and gene conversion in the generation of haplotypic diversity

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Linkage disequilibrium due to random genetic drift in finite subdivided populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Patterns of nucleotide diversity in wild and cultivated sunflower

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Relative influences of crossing over and gene conversion on the pattern of linkage disequilibrium in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Genome-wide association mapping in Arabidopsis identifies previously known flowering time and pathogen resistance genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Selection for recombination in structured populations

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

The pattern of polymorphism in Arabidopsis thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Comparative genome analyses of Arabidopsis spp.: inferring chromosomal rearrangement events in the evolutionary history of A. thaliana

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Low levels of linkage disequilibrium in wild barley (Hordeum vulgare ssp. spontaneum) despite high rates of self-fertilization

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Evolution of genome size in Brassicaceae

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Molecular population genetics and the search for adaptive evolution in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Haploview: analysis and visualization of LD and haplotype maps

1 reference

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14 September 2017

Multilocus analysis of variation and speciation in the closely related species Arabidopsis halleri and A. lyrata

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

DnaSP, DNA polymorphism analyses by the coalescent and other methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Structure of linkage disequilibrium in plants

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Inference of population structure using multilocus genotype data: linked loci and correlated allele frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Large-scale identification and analysis of genome-wide single-nucleotide polymorphisms for mapping in Arabidopsis thaliana

1 reference

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14 September 2017

Application of microarray technology in environmental and comparative physiology

1 reference

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Recombination and gene conversion in a 170-kb genomic region of Arabidopsis thaliana.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

A coalescent-based method for detecting and estimating recombination from gene sequences

1 reference

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14 September 2017

Plant molecular diversity and applications to genomics

1 reference

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14 September 2017

Molecular population genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Two-locus sampling distributions and their application

1 reference

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14 September 2017

Structure of linkage disequilibrium and phenotypic associations in the maize genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

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Genetic diversity and introgression in the Scottish wildcat

1 reference

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Genetic isolation by distance in Arabidopsis thaliana: biogeography and postglacial colonization of Europe

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

14 September 2017

Inference of population structure using multilocus genotype data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651039

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Primer3 on the WWW for general users and for biologist programmers

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

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The analysis of population survey data on DNA sequence variation

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Estimation of levels of gene flow from DNA sequence data

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Sexual reproduction, hybridization, apomixis, and polyploidization in the genus Boechera (Brassicaceae).

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14 September 2017

Effects of inbreeding on the genetic diversity of populations

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A multilocus sequence survey in Arabidopsis thaliana reveals a genome-wide departure from a neutral model of DNA sequence polymorphism

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1 reference

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Population genetic structure of Arabidopsis lyrata in Europe

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Multilocus genetic structure at contrasted spatial scales of the endangered water fern Marsilea strigosa Willd. (Marsileaceae, Pteridophyta)

1 reference

https://pubmed.ncbi.nlm.nih.gov/19104077

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A FORTRAN program for analysis of genotypic frequencies and description of the breeding structure of populations

1 reference

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ANALYZING TABLES OF STATISTICAL TESTS

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https://pubmed.ncbi.nlm.nih.gov/19104077

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genalex 6: genetic analysis in Excel. Population genetic software for teaching and research

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Identifiers

10.1534/GENETICS.108.095364

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

18 August 2017

ResearchGate publication ID

0 references

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