(Q37183697)

18 August 2017

Syntax compensates for poor binding sites to encode tissue specificity of developmental enhancers (English)

1 reference

18 August 2017

4

1 reference

18 August 2017

Emma K Farley

1

0 references

Wei Zhang

object named as

Wei Zhang

series ordinal

3

0 references

author name string

Katrina M Olson

series ordinal

2

1 reference

PMCID

4988596

18 August 2017

Michael S Levine

series ordinal

5

1 reference

PMCID

4988596

18 August 2017

language of work or name

English

0 references

publication date

6 May 2016

1 reference

Proceedings of the National Academy of Sciences of the United States of America

18 August 2017

1 reference

18 August 2017

113

1 reference

18 August 2017

23

1 reference

18 August 2017

6508-6513

1 reference

Suboptimization of developmental enhancers

18 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

UniPROBE, update 2015: new tools and content for the online database of protein-binding microarray data on protein-DNA interactions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

SoxB1-driven transcriptional network underlies neural-specific interpretation of morphogen signals

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Rapid evolutionary rewiring of a structurally constrained eye enhancer

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers foster robustness of Drosophila gastrulation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Genome-wide analysis of ETS-family DNA-binding in vitro and in vivo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers as a source of evolutionary novelty

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Direct activation by Ets and Zic is required for initial expression of the Brachyury gene in the ascidian notochord.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Three habits of highly effective signaling pathways: principles of transcriptional control by developmental cell signaling

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Brinker is a sequence-specific transcriptional repressor in the Drosophila embryo

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Dual requirement for the EcR/USP nuclear receptor and the dGATAb factor in an ecdysone response in Drosophila melanogaster

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Multiple functions of a Zic-like gene in the differentiation of notochord, central nervous system and muscle in Ciona savignyi embryos.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Low affinity binding site clusters confer hox specificity and regulatory robustness.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Low-affinity transcription factor binding sites shape morphogen responses and enhancer evolution

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Transcriptional regulation of a pair-rule stripe in Drosophila.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Shadow enhancers flanking the HoxB cluster direct dynamic Hox expression in early heart and endoderm development.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

FGF signaling establishes the anterior border of the Ciona neural tube

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Neural tube patterning by Ephrin, FGF and Notch signaling relays

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A cis-regulatory signature in ascidians and flies, independent of transcription factor binding sites.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Ephrin signaling establishes asymmetric cell fates in an endomesoderm lineage of the Ciona embryo

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A combinatorial code of maternal GATA, Ets and beta-catenin-TCF transcription factors specifies and patterns the early ascidian ectoderm.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Regulatory blueprint for a chordate embryo.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

A zinc finger transcription factor, ZicL, is a direct activator of Brachyury in the notochord specification of Ciona intestinalis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Binding affinities and cooperative interactions with bHLH activators delimit threshold responses to the dorsal gradient morphogen

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=4988596

Conservation of transcription factor binding specificities across 600 million years of bilateria evolution

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.1605085113

FGF8/17/18 functions together with FGF9/16/20 during formation of the notochord in Ciona embryos

21 January 2018

1 reference

12 December 2020

Neural tissue in ascidian embryos is induced by FGF9/16/20, acting via a combination of maternal GATA and Ets transcription factors

1 reference

12 December 2020

Electroporation of Transgenic DNAs in the Sea Squirt Ciona

1 reference

12 December 2020

Induction of anterior neural fates in the ascidian Ciona intestinalis

1 reference

12 December 2020

Identifiers

DOI

10.1073/PNAS.1605085113

1 reference

18 August 2017

1 reference

18 August 2017

1 reference

PMCID

4988596