(Q37209109)

19 August 2017

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title

Potential implications of availability of short amino acid sequences in proteins: an old and new approach to protein decoding and design (English)

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19 August 2017

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1

Joji M Otaki

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19 August 2017

Tomonori Gotoh

2

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19 August 2017

Haruhiko Yamamoto

series ordinal

3

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19 August 2017

language of work or name

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1 January 2008

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Biotechnology Annual Review

19 August 2017

published in

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19 August 2017

volume

14

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19 August 2017

page(s)

109-141

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Low host specificity of herbivorous insects in a tropical forest

19 August 2017

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Prediction of protein conformation

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An attempt to locate the non-helical and permissively helical sequences of proteins: application to the variable regions of immunoglobulin light and heavy chains

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The influence of nearest-neighbor amino acids on the conformation of the middle amino acid in proteins: comparison of predicted and experimental determination of -sheets in concanavalin A.

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Analysis of the accuracy and implications of simple methods for predicting the secondary structure of globular proteins

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7 January 2021

Further developments of protein secondary structure prediction using information theory. New parameters and consideration of residue pairs

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Algorithms for prediction of alpha-helical and beta-structural regions in globular proteins

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Secondary structural wobble: the limits of protein prediction accuracy

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

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7 January 2021

The relation between the divergence of sequence and structure in proteins

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Assessing annotation transfer for genomics: quantifying the relations between protein sequence, structure and function through traditional and probabilistic scores.

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7 January 2021

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7 January 2021

Query3d: a new method for high-throughput analysis of functional residues in protein structures

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7 January 2021

A structure-based method for protein sequence alignment

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7 January 2021

An ant colony optimisation algorithm for the 2D and 3D hydrophobic polar protein folding problem

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7 January 2021

Protein secondary structure prediction for a single-sequence using hidden semi-Markov models

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7 January 2021

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Sequence comparison and protein structure prediction.

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7 January 2021

Molecular tinkering of G protein-coupled receptors: an evolutionary success

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7 January 2021

G protein coupled receptor structure and activation

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7 January 2021

G-protein coupled receptor structure

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7 January 2021

Hidden Markov Models of the G-protein-coupled receptor family

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7 January 2021

Length analyses of mammalian G-protein-coupled receptors

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7 January 2021

Classifying G-protein coupled receptors with support vector machines

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7 January 2021

Classification of G-protein coupled receptors by alignment-independent extraction of principal chemical properties of primary amino acid sequences

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7 January 2021

Identification of transmembrane protein functions by binary topology patterns

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7 January 2021

GPCRpred: an SVM-based method for prediction of families and subfamilies of G-protein coupled receptors.

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7 January 2021

Proteome-wide classification and identification of mammalian-type GPCRs by binary topology pattern.

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7 January 2021

Classifying G-protein coupled receptors with bagging classification tree.

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Prediction and classification of human G-protein coupled receptors based on support vector machines

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7 January 2021

A general model of G protein-coupled receptor sequences and its application to detect remote homologs

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7 January 2021

Alignment-free classification of G-protein-coupled receptors using self-organizing maps.

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7 January 2021

A novel multigene family may encode odorant receptors: a molecular basis for odor recognition

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7 January 2021

Functional expression of a mammalian odorant receptor

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7 January 2021

Identification of ligands for olfactory receptors by functional expression of a receptor library

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7 January 2021

Combinatorial receptor codes for odors

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7 January 2021

Functional identification and reconstitution of an odorant receptor in single olfactory neurons

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7 January 2021

A spatial map of olfactory receptor expression in the Drosophila antenna.

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7 January 2021

A novel family of divergent seven-transmembrane proteins: candidate odorant receptors in Drosophila.

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7 January 2021

Identification of candidate Drosophila olfactory receptors from genomic DNA sequence

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7 January 2021

Functional expression and characterization of a Drosophila odorant receptor in a heterologous cell system

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7 January 2021

Functional analysis of an olfactory receptor in Drosophila melanogaster

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7 January 2021

Length analyses of Drosophila odorant receptors

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7 January 2021

Atypical membrane topology and heteromeric function of Drosophila odorant receptors in vivo

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7 January 2021

On the ORigin of smell: odorant receptors in insects

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7 January 2021

Amino acid composition of parallel helix-helix interfaces.

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7 January 2021

Use of amino acid composition to predict ligand-binding sites

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7 January 2021

Novel scales based on hydrophobicity indices for secondary protein structure.

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7 January 2021

Sequence complexity of disordered protein

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7 January 2021

Insights into protein structure and function from disorder-complexity space.

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7 January 2021

Reduced amino acid alphabet is sufficient to accurately recognize intrinsically disordered protein.

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7 January 2021

Predicting disordered regions in proteins based on decision trees of reduced amino acid composition.

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7 January 2021

Proteome-wide prediction of novel DNA/RNA-binding proteins using amino acid composition and periodicity in the hyperthermophilic archaeon Pyrococcus furiosus

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7 January 2021

What determines protein folding type? An investigation of intrinsic structural properties and its implications for understanding folding mechanisms.

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7 January 2021

Amino acid composition of genomes, lifestyles of organisms, and evolutionary trends: a global picture with correspondence analysis

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7 January 2021

Evolution of proteomes: fundamental signatures and global trends in amino acid compositions

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7 January 2021

Trend of amino acid composition of proteins of different taxa

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7 January 2021

Proteomic signatures: amino acid and oligopeptide compositions differentiate among phyla.

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7 January 2021

Helix to helix packing in proteins

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7 January 2021

Principles that determine the structure of proteins

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7 January 2021

The molecular architecture of protein-protein binding sites.

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7 January 2021

Evolutionary molecular engineering by random elongation mutagenesis

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7 January 2021

Modulation of the Escherichia coli tryptophan repressor protein by engineered peptides

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7 January 2021

Screening for receptor ligands using large libraries of peptides linked to the C terminus of the lac repressor

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7 January 2021

Availability of short amino acid sequences in proteins

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7 January 2021

Amino acid runs in eukaryotic proteomes and disease associations

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7 January 2021

Amino acids runs and genomic compositional biases in vertebrates

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7 January 2021

Current status of short synthetic peptides as vaccines

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7 January 2021

Random peptide libraries.

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7 January 2021

A simple method for displaying the hydropathic character of a protein

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7 January 2021

Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins

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7 January 2021

Amphiphilicity index of polar amino acids as an aid in the characterization of amino acid preference at membrane-water interfaces

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7 January 2021

Conformational preferences of amino acids in globular proteins

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7 January 2021

Mechanisms of secondary structure breakers in soluble proteins

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7 January 2021

Conformation of Polypeptides and Proteins

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7 January 2021

Prediction of membrane protein types from sequences and position-specific scoring matrices

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7 January 2021

Using amino acid and peptide composition to predict membrane protein types.

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7 January 2021

Correlation and prediction of gene expression level from amino acid and dipeptide composition of its protein

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7 January 2021

A sequence alignment-independent method for protein classification

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7 January 2021

Classification of G-protein coupled receptors at four levels.

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7 January 2021

A study on the correlation of G-protein-coupled receptor types with amino acid composition.

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7 January 2021

Classification and identification of proteins by means of common and specific amino acid n-tuples in unaligned sequences.

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7 January 2021

A sequence property approach to searching protein databases

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7 January 2021

A Novel algorithm for identifying low-complexity regions in a protein sequence

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7 January 2021

Prediction of protein cellular attributes using pseudo-amino acid composition

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7 January 2021

Prediction of flexible/rigid regions from protein sequences using k-spaced amino acid pairs

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7 January 2021

Amino acid coupling patterns in thermophilic proteins

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7 January 2021

Using pseudo amino acid composition to predict protein structural class: approached by incorporating 400 dipeptide components.

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7 January 2021

Using pseudo-amino acid composition and support vector machine to predict protein structural class.

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7 January 2021

Using pseudo amino acid composition and binary-tree support vector machines to predict protein structural classes.

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7 January 2021

Using pseudo amino acid composition to predict transmembrane regions in protein: cellular automata and Lempel-Ziv complexity

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7 January 2021

Amino acids as placeholders: base-composition pressures on protein length in malaria parasites and prokaryotes

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7 January 2021

Intrinsically unstructured proteins and their functions

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7 January 2021

Towards proteomic approaches for the identification of structural disorder

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7 January 2021

Mechanism of coupled folding and binding of an intrinsically disordered protein

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7 January 2021

Intrinsically disordered protein

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7 January 2021

Intrinsically unstructured proteins: re-assessing the protein structure-function paradigm

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7 January 2021

The protein trinity--linking function and disorder.

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7 January 2021

10.1016/S1387-2656(08)00004-5

Identifiers

DOI

1 reference

19 August 2017

1 reference