(Q37232051)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

title

Temperature dependence of the DNA double helix at the nanoscale: structure, elasticity, and fluctuations (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1

Sam Meyer

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

2

Daniel Jost

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

Nikos Theodorakopoulos

series ordinal

3

object named as

Nikos Theodorakopoulos

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

4

Michel Peyrard

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

5

Richard Lavery

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

6

Ralf Everaers

2 references

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

19 August 2017

language of work or name

English

0 references

publication date

1 October 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

volume

105

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

issue

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

page(s)

1904-1914

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

Theoretical analysis of competing conformational transitions in superhelical DNA.

28 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Temperature dependence of DNA persistence length

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

A systematic molecular dynamics study of nearest-neighbor effects on base pair and base pair step conformations and fluctuations in B-DNA.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Conformational analysis of nucleic acids revisited: Curves+

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Cell proliferation at 122 degrees C and isotopically heavy CH4 production by a hyperthermophilic methanogen under high-pressure cultivation

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Indirect readout: detection of optimized subsequences and calculation of relative binding affinities using different DNA elastic potentials.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Molecular dynamics simulations of the 136 unique tetranucleotide sequences of DNA oligonucleotides. I. Research design and results on d(CpG) steps

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Development of an improved four-site water model for biomolecular simulations: TIP4P-Ew

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

DNA Basepair Step Deformability Inferred from Molecular Dynamics Simulations

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Solvent mediated interactions in the structure of the nucleosome core particle at 1.9 a resolution

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

A standard reference frame for the description of nucleic acid base-pair geometry.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

DNA sequence-dependent deformability deduced from protein-DNA crystal complexes

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Crystal structure of a yeast TBP/TATA-box complex

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Protein HU in the enzymatic replication of the chromosomal origin of Escherichia coli

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

The Upper Temperature Limit for Eukaryotic Organisms

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Definitions and nomenclature of nucleic acid structure components

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Supercoiling of the DNA template during transcription

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

DNA stability and DNA binding proteins.

9 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Exact theory of kinkable elastic polymers.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Twist-DNA: computing base-pair and bubble opening probabilities in genomic superhelical DNA.

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Base pair openings and temperature dependence of DNA flexibility.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Genome wide application of DNA melting analysis.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Melting of genomic DNA: Predictive modeling by nonlinear lattice dynamics

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

From rigid base pairs to semiflexible polymers: coarse-graining DNA.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3797588

Statistical mechanics of a nonlinear model for DNA denaturation

3 September 2018

1 reference

12 December 2020

Simplification of the empirical relationship between melting temperature of DNA, its GC content and concentration of sodium ions in solution

1 reference

12 December 2020

Phase transitions in one dimension and the helix-coil transition in polyamino acids

1 reference

12 December 2020

Transcription-driven supercoiling of DNA: direct biochemical evidence from in vitro studies

1 reference

12 December 2020

Localized single-stranded bubble mechanism for cyclization of short double helix DNA

1 reference

12 December 2020

The expression of the Escherichia coli fis gene is strongly dependent on the superhelical density of DNA

1 reference

12 December 2020

Entropy-driven DNA denaturation

1 reference

12 December 2020

Bubble statistics and positioning in superhelically stressed DNA

1 reference

12 December 2020

Theoretical analysis of the helix-coil transition in positively superhelical DNA at high temperatures

1 reference

12 December 2020

Matplotlib: A 2D Graphics Environment

1 reference

28 May 2022

https://opencitations.net/index/coci/api/v1/citations/10.1109/MCSE.2007.55

Identifiers

DOI

10.1016/J.BPJ.2013.09.004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json

28 February 2020

PubMed publication ID

24138866

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24138866%20AND%20SRC:MED&resulttype=core&format=json