(Q37234116)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

title

Examination of matrix metalloproteinase-1 in solution: a preference for the pre-collagenolysis state (English)

1 reference

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20 February 2020

1

1 reference

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20 February 2020

Marco Fragai

3

1 reference

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20 February 2020

Carlos F. G. C. Geraldes

4

1 reference

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20 February 2020

Claudio Luchinat

5

1 reference

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20 February 2020

Giacomo Parigi

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Enrico Ravera

7

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

Dmitri Svergun

8

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

João M C Teixeira

9

1 reference

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20 February 2020

2

Gregg B Fields

1 reference

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20 February 2020

language of work or name

English

0 references

publication date

11 September 2013

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

Journal of Biological Chemistry

20 February 2020

published in

1 reference

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20 February 2020

volume

288

1 reference

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20 February 2020

issue

42

1 reference

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20 February 2020

page(s)

30659-30671

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

New developments in the ATSAS program package for small-angle scattering data analysis

20 February 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Interstitial collagen catabolism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Structural insights into triple-helical collagen cleavage by matrix metalloproteinase 1

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Single-molecule tracking of collagenase on native type I collagen fibrils reveals degradation mechanism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Structural basis for matrix metalloproteinase 1-catalyzed collagenolysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

The interface between catalytic and hemopexin domains in matrix metalloproteinase-1 conceals a collagen binding exosite.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Transient, sparsely populated compact states of apo and calcium-loaded calmodulin probed by paramagnetic relaxation enhancement: interplay of conformational selection and induced fit.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Domain cooperativity in multidomain proteins: what can we learn from molecular alignment in anisotropic media?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

The catalytic domain of MMP-1 studied through tagged lanthanides

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Simultaneous structure and dynamics of a membrane protein using REDCRAFT: Membrane-bound form of Pf1 coat protein

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Conformational space of flexible biological macromolecules from average data

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Identification of specific hemopexin-like domain residues that facilitate matrix metalloproteinase collagenolytic activity.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Can morphing methods predict intermediate structures?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Design, synthesis, and evaluation of a lanthanide chelating protein probe: CLaNP-5 yields predictable paramagnetic effects independent of environment.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Recognition dynamics up to microseconds revealed from an RDC-derived ubiquitin ensemble in solution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Evidence of reciprocal reorientation of the catalytic and hemopexin-like domains of full-length MMP-12

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Dynamics in a pure encounter complex of two proteins studied by solution scattering and paramagnetic NMR spectroscopy

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Structural characterization of flexible proteins using small-angle X-ray scattering

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Differentiation of secreted and membrane-type matrix metalloproteinase activities based on substitutions and interruptions of triple-helical sequences

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Solution structure and dynamics of the complex between cytochrome c and cytochrome c peroxidase determined by paramagnetic NMR

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Visualization of transient encounter complexes in protein-protein association.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Detecting transient intermediates in macromolecular binding by paramagnetic NMR.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Combining in silico tools and NMR data to validate protein-ligand structural models: application to matrix metalloproteinases

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

A structural model for unfolded proteins from residual dipolar couplings and small-angle x-ray scattering.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Simultaneous determination of protein structure and dynamics.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Collagenase unwinds triple-helical collagen prior to peptide bond hydrolysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Experimentally exploring the conformational space sampled by domain reorientation in calmodulin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Flexible structure alignment by chaining aligned fragment pairs allowing twists

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Molecular determinants of metalloproteinase substrate specificity: matrix metalloproteinase substrate binding domains, modules, and exosites

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Structural and dynamic analysis of residual dipolar coupling data for proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Structure of full-length porcine synovial collagenase reveals a C-terminal domain containing a calcium-linked, four-bladed beta-propeller

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

MaxOcc: a web portal for maximum occurrence analysis

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Improvement and analysis of computational methods for prediction of residual dipolar couplings

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

A model of interdomain mobility in a multidomain protein

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Insights into the structure and domain flexibility of full-length pro-matrix metalloproteinase-9/gelatinase B.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Crystal structure of an active form of human MMP-1.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Insight into the degradation of type-I collagen fibrils by MMP-8.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Paramagnetic relaxation enhancement for the characterization of the conformational heterogeneity in two-domain proteins

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

The collagenolytic action of MMP-1 is regulated by the interaction between the catalytic domain and the hinge region

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Recognition pliability is coupled to structural heterogeneity: a calmodulin intrinsically disordered binding region complex

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Maximum occurrence analysis of protein conformations for different distributions of paramagnetic metal ions within flexible two-domain proteins.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Narrowing the conformational space sampled by two-domain proteins with paramagnetic probes in both domains

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Interdomain flexibility in full-length matrix metalloproteinase-1 (MMP-1).

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

A dipicolinic acid tag for rigid lanthanide tagging of proteins and paramagnetic NMR spectroscopy

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Paramagnetism-based NMR restraints provide maximum allowed probabilities for the different conformations of partially independent protein domains.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

X-ray structure of human proMMP-1: new insights into procollagenase activation and collagen binding

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Interstitial collagenase is a Brownian ratchet driven by proteolysis of collagen

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Novel techniques for weak alignment of proteins in solution using chemical tags coordinating lanthanide ions.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Paramagnetic metal ions in ligand screening: the Co(II) matrix metalloproteinase 12.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

REDCAT: a residual dipolar coupling analysis tool

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

Unexpected crucial role of residue 272 in substrate specificity of fibroblast collagenase

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3798536

CRYSOL– a Program to Evaluate X-ray Solution Scattering of Biological Macromolecules from Atomic Coordinates

3 September 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

PRIMUS: a Windows PC-based system for small-angle scattering data analysis

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Protein Alignment by a Coexpressed Lanthanide-Binding Tag for the Measurement of Residual Dipolar Couplings

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Snapshots of the Reaction Mechanism of Matrix Metalloproteinases

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Conformational freedom of metalloproteins revealed by paramagnetism-assisted NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Tuning the Affinity for Lanthanides of Calcium Binding Proteins†

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Magnetic susceptibility in paramagnetic NMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Uniqueness and degeneracy in the localization of rigid structural elements in paramagnetic proteins

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Moving the frontiers in solution and solid-state bioNMR

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Efficient determination of the most favoured orientations of protein domains from paramagnetic NMR data

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Visualizing spatially correlated dynamics that directs RNA conformational transitions

21 January 2018

1 reference

https://api.crossref.org/works/10.1074%2FJBC.M113.477240

Atomic force microscopy-based detection of binding and cleavage site of matrix metalloproteinase on individual type II collagen helices

21 January 2018

1 reference

12 December 2020

Visualization of the encounter ensemble of the transient electron transfer complex of cytochrome c and cytochrome c peroxidase

1 reference

12 December 2020

Characterization of the distinct collagen binding, helicase and cleavage mechanisms of matrix metalloproteinase 2 and 14 (gelatinase A and MT1-MMP): the differential roles of the MMP hemopexin c domains and the MMP-2 fibronectin type II modules in c

1 reference

12 December 2020

Protease yoga: extreme flexibility of a matrix metalloproteinase

1 reference

12 December 2020

Identifiers

DOI

10.1074/JBC.M113.477240

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24025334%20AND%20SRC:MED&resulttype=core&format=json

20 February 2020

PubMed publication ID

24025334

1 reference