(Q37235314)

English

Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition

scientific article published on 15 April 2009

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scholarly article

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Constructing RNA dynamical ensembles by combining MD and motionally decoupled NMR RDCs: new insights into RNA dynamics and adaptive ligand recognition (English)

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

author name string

Aaron T Frank

1

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Andrew C Stelzer

2

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Hashim M Al-Hashimi

3

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Ioan Andricioaei

4

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

language of work or name

0 references

publication date

15 April 2009

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

Nucleic Acids Research

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

37

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

11

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

3670-3679

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

1 reference

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Characterizing complex dynamics in the transactivation response element apical loop and motional correlations with the bulge by NMR, molecular dynamics, and mutagenesis

1 reference

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RNA dynamics: it is about time.

1 reference

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6 September 2017

Recent advances in the study of nucleic acid flexibility by molecular dynamics

1 reference

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Molecular dynamics simulations of nucleic acid-protein complexes.

1 reference

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Dynamic personalities of proteins

1 reference

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6 September 2017

Time-resolved NMR studies of RNA folding

1 reference

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Characterizing the relative orientation and dynamics of RNA A-form helices using NMR residual dipolar couplings

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Deciphering protein dynamics from NMR data using explicit structure sampling and selection

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iRED analysis of TAR RNA reveals motional coupling, long-range correlations, and a dynamical hinge

1 reference

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Flipping riboswitches

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New tools provide new insights in NMR studies of protein dynamics

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Dynamics-based amplification of RNA function and its characterization by using NMR spectroscopy

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Riboswitches as versatile gene control elements

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Simultaneous determination of protein structure and dynamics.

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6 September 2017

Argininamide binding arrests global motions in HIV-1 TAR RNA: comparison with Mg2+-induced conformational stabilization

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6 September 2017

Rational design of inhibitors of HIV-1 TAR RNA through the stabilisation of electrostatic "hot spots"

1 reference

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3DNA: a software package for the analysis, rebuilding and visualization of three-dimensional nucleic acid structures

1 reference

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6 September 2017

Structure of TAR RNA complexed with a Tat-TAR interaction nanomolar inhibitor that was identified by computational screening

1 reference

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6 September 2017

Towards structural genomics of RNA: rapid NMR resonance assignment and simultaneous RNA tertiary structure determination using residual dipolar couplings

1 reference

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Development and current status of the CHARMM force field for nucleic acids.

1 reference

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6 September 2017

Current topics in RNA-protein recognition: control of specificity and biological function through induced fit and conformational capture

1 reference

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6 September 2017

Recent advances in RNA-protein recognition.

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6 September 2017

Induced fit in RNA-protein recognition

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6 September 2017

Structural rearrangements of HIV-1 Tat-responsive RNA upon binding of neomycin B

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Canonical dynamics: Equilibrium phase-space distributions

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A 1.3-A resolution crystal structure of the HIV-1 trans-activation response region RNA stem reveals a metal ion-dependent bulge conformation

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Locally accessible conformations of proteins: multiple molecular dynamics simulations of crambin

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Direct measurement of distances and angles in biomolecules by NMR in a dilute liquid crystalline medium

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Solution structure of the HIV-2 TAR-argininamide complex

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Structure of HIV-1 TAR RNA in the absence of ligands reveals a novel conformation of the trinucleotide bulge

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Nuclear magnetic dipole interactions in field-oriented proteins: information for structure determination in solution

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The structure of the human immunodeficiency virus type-1 TAR RNA reveals principles of RNA recognition by Tat protein

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NMR and MD studies of the temperature-dependent dynamics of RNA YNMG-tetraloops.

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Probing Na(+)-induced changes in the HIV-1 TAR conformational dynamics using NMR residual dipolar couplings: new insights into the role of counterions and electrostatic interactions in adaptive recognition

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Order matrix analysis of residual dipolar couplings using singular value decomposition.

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19369218

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19369218

12 December 2020

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inferred from PubMed ID database lookup

Isotropic reorientational eigenmode dynamics complements NMR relaxation measurements for RNA

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https://pubmed.ncbi.nlm.nih.gov/19369218

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Exploring multiple timescale motions in protein GB3 using accelerated molecular dynamics and NMR spectroscopy

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Conformation of the TAR RNA-Arginine Complex by NMR Spectroscopy

1 reference

https://pubmed.ncbi.nlm.nih.gov/19369218

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based on heuristic

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1 reference

https://pubmed.ncbi.nlm.nih.gov/19369218

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based on heuristic

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Probing motions between equivalent RNA domains using magnetic field induced residual dipolar couplings: accounting for correlations between motions and alignment

1 reference

https://pubmed.ncbi.nlm.nih.gov/19369218

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Identifiers

10.1093/NAR/GKP156

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

19 August 2017

ResearchGate publication ID

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