(Q37282428)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

title

High frequency of hotspot mutations in core genes of Escherichia coli due to short-term positive selection (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

0 references

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

5

Daniel E Dykhuizen

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

author name string

Sujay Chattopadhyay

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Scott J Weissman

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Thomas A Russo

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

Evgeni V Sokurenko

6

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

language of work or name

English

0 references

publication date

15 July 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

2 February 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

volume

106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

issue

30

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

page(s)

12412-12417

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

The pangenome structure of Escherichia coli: comparative genomic analysis of E. coli commensal and pathogenic isolates

2 February 2020

cites work

1 reference

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Historical contingency and the evolution of a key innovation in an experimental population of Escherichia coli

6 September 2017

1 reference

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SNPs in disease gene mapping, medicinal drug development and evolution

6 September 2017

1 reference

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Phylogenomic analysis of natural selection pressure in Streptococcus genomes

6 September 2017

1 reference

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Evolution of global regulatory networks during a long-term experiment with Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Genes under positive selection in Escherichia coli.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

ZPS: visualization of recent adaptive evolution of proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Differential stability and trade-off effects of pathoadaptive mutations in the Escherichia coli FimH adhesin

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

MEGA4: Molecular Evolutionary Genetics Analysis (MEGA) Software Version 4.0

6 September 2017

1 reference

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Defining genomic islands and uropathogen-specific genes in uropathogenic Escherichia coli

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

How to become a uropathogen: comparative genomic analysis of extraintestinal pathogenic Escherichia coli strains

6 September 2017

1 reference

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Source-sink dynamics of virulence evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Origin of mutations under selection: the adaptive mutation controversy.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Sex and virulence in Escherichia coli: an evolutionary perspective

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Evolution of mutation rates in bacteria

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Identification of genes subject to positive selection in uropathogenic strains of Escherichia coli: a comparative genomics approach.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

A simple and robust statistical test for detecting the presence of recombination

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

The viral polymerase mediates adaptation of an avian influenza virus to a mammalian host.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Large-scale sequencing of human influenza reveals the dynamic nature of viral genome evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Evaluation of an improved branch-site likelihood method for detecting positive selection at the molecular level

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Escherichia coli K1 polysialic acid O-acetyltransferase gene, neuO, and the mechanism of capsule form variation involving a mobile contingency locus

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Lateral gene transfer in eukaryotes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Genomic islands in pathogenic and environmental microorganisms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Mutation rate and evolution of fluoroquinolone resistance in Escherichia coli isolates from patients with urinary tract infections.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

DAVID: Database for Annotation, Visualization, and Integrated Discovery

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Extensive mosaic structure revealed by the complete genome sequence of uropathogenic Escherichia coli.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Predicting evolutionary potential: in vitro evolution accurately reproduces natural evolution of the tem beta-lactamase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Experimental evolution recapitulates natural evolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Horizontal gene transfer in bacterial and archaeal complete genomes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Shared themes of antigenic variation and virulence in bacterial, protozoal, and fungal infections.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Statistical tests of neutrality of mutations

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Simple methods for estimating the numbers of synonymous and nonsynonymous nucleotide substitutions

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Pattern of nucleotide substitution at major histocompatibility complex class I loci reveals overdominant selection

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Statistical method for testing the neutral mutation hypothesis by DNA polymorphism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Selection for functional diversity drives accumulation of point mutations in Dr adhesins of Escherichia coli.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Simulating DNA coding sequence evolution with EvolveAGene 3.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Haplotype diversity in "source-sink" dynamics of Escherichia coli urovirulence.

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Phylogenetic relationships among clonal groups of extraintestinal pathogenic Escherichia coli as assessed by multi-locus sequence analysis

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Selection footprint in the FimH adhesin shows pathoadaptive niche differentiation in Escherichia coli

3 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2718352

Quantitative Phyletics and the Evolution of Anurans

3 September 2018

1 reference

Crossref

https://api.crossref.org/works/10.1073%2FPNAS.0906217106

MOLECULAR BIOLOGY:DNA Methylation de Novo

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19617543

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Pathoadaptive mutations: gene loss and variation in bacterial pathogens

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19617543

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0906217106

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

0 references

release_uz5lavvsubfphdwxke6r2b2wcy

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/uz5lavvsubfphdwxke6r2b2wcy

mapped directly with Wikidata item

24 November 2022

based on heuristic

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19617543%20AND%20SRC:MED&resulttype=core&format=json

2 February 2020

PubMed publication ID

19617543

1 reference