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RNA folding and ribosome assembly
scientific article published on 18 October 2008
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scholarly article
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Europe PubMed Central
PMCID
2651837
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19 August 2017
review article
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Europe PubMed Central
title
RNA folding and ribosome assembly
(English)
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Europe PubMed Central
PMCID
2651837
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19 August 2017
author
Sarah A Woodson
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Sarah A Woodson
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publication date
18 October 2008
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Europe PubMed Central
PMCID
2651837
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19 August 2017
published in
Current Opinion in Chemical Biology
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PMCID
2651837
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19 August 2017
volume
12
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Europe PubMed Central
PMCID
2651837
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19 August 2017
page(s)
667-673
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Europe PubMed Central
PMCID
2651837
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19 August 2017
issue
6
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Europe PubMed Central
PMCID
2651837
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19 August 2017
cites work
Biophysical studies of bacterial ribosome assembly
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PubMed Central
reference URL
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retrieved
6 September 2017
The post-transcriptional steps of eukaryotic ribosome biogenesis
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PubMed Central
reference URL
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retrieved
6 September 2017
Bud23 methylates G1575 of 18S rRNA and is required for efficient nuclear export of pre-40S subunits
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
Structural Aspects of RbfA Action during Small Ribosomal Subunit Assembly
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
Ribosome biogenesis and the translation process in Escherichia coli
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
Role of GTPases in ribosome assembly
1 reference
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PubMed Central
reference URL
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retrieved
6 September 2017
Transcription elongation by RNA polymerase I is linked to efficient rRNA processing and ribosome assembly.
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PubMed Central
reference URL
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6 September 2017
Temperature-dependent RNP conformational rearrangements: analysis of binary complexes of primary binding proteins with 16 S rRNA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
A housekeeper with power of attorney: the rRNA genes in ribosome biogenesis
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
Hrr25-dependent phosphorylation state regulates organization of the pre-40S subunit
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
30S ribosomal subunits can be assembled in vivo without primary binding ribosomal protein S15.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
An assembly landscape for the 30S ribosomal subunit
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
An essential GTPase promotes assembly of preribosomal RNA processing complexes
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Single-molecule RNA folding
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PubMed Central
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6 September 2017
Interaction of Era with the 30S ribosomal subunit implications for 30S subunit assembly
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PubMed Central
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6 September 2017
Metal ions and RNA folding: a highly charged topic with a dynamic future
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
RNA and protein folding: common themes and variations
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
The PRC-barrel domain of the ribosome maturation protein RimM mediates binding to ribosomal protein S19 in the 30S ribosomal subunits
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
After the ribosome structures: how are the subunits assembled?
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Atomic structures at last: the ribosome in 2000.
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Induced fit in RNA-protein recognition
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Structure of the 30S ribosomal subunit
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
6 September 2017
The location of protein S8 and surrounding elements of 16S rRNA in the 70S ribosome from combined use of directed hydroxyl radical probing and X-ray crystallography
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
The economics of ribosome biosynthesis in yeast
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
The crystal structure of ribosomal protein S4 reveals a two-domain molecule with an extensive RNA-binding surface: one domain shows structural homology to the ETS DNA-binding motif
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Yeast 18S rRNA dimethylase Dim1p: a quality control mechanism in ribosome synthesis?
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PubMed Central
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6 September 2017
Ribosomal protein S7: a new RNA-binding motif with structural similarities to a DNA architectural factor
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
The structure of ribosomal protein S7 at 1.9 A resolution reveals a beta-hairpin motif that binds double-stranded nucleic acids
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PubMed Central
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6 September 2017
Structure and function of E. coli ribosomes. V. Reconstitution of functionally active 30S ribosomal particles from RNA and proteins
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PubMed Central
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6 September 2017
RNA-protein interactions in 30S ribosomal subunits: folding and function of 16S rRNA.
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PubMed Central
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6 September 2017
Ribosomal RNA and translation
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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6 September 2017
Suppression of a cold-sensitive mutation in ribosomal protein S5 reveals a role for RimJ in ribosome biogenesis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
14 September 2017
RimM and RbfA are essential for efficient processing of 16S rRNA in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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14 September 2017
Hydroxyl radical footprinting of ribosomal proteins on 16S rRNA.
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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26 June 2018
Structure and function of Escherichia coli ribosomes. VI. Mechanism of assembly of 30 s ribosomes studied in vitro.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
26 June 2018
Assembly of the 30S subunit from Escherichia coli ribosomes occurs via two assembly domains which are initiated by S4 and S7.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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26 June 2018
Building ribosomes: even more expensive than expected?
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
2 September 2018
Era and RbfA have overlapping function in ribosome biogenesis in Escherichia coli.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
The adenosine dimethyltransferase KsgA recognizes a specific conformational state of the 30S ribosomal subunit
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
Mapping structural differences between 30S ribosomal subunit assembly intermediates.
1 reference
stated in
PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
Recognition of 16S rRNA by ribosomal protein S4 from Bacillus stearothermophilus
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
Dynamics of in vitro assembly of 16 S rRNA into 30 S ribosomal subunits.
1 reference
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2 September 2018
A temperature-dependent conformational rearrangement in the ribosomal protein S4.16 S rRNA complex
1 reference
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PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
retrieved
2 September 2018
Suppression of a cold-sensitive mutation in 16S rRNA by overexpression of a novel ribosome-binding factor, RbfA.
1 reference
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
Analysis of the In Vivo Assembly Pathway of Eukaryotic 40S Ribosomal Proteins
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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2 September 2018
Crystal structure of the 30 s ribosomal subunit from Thermus thermophilus: structure of the proteins and their interactions with 16 s RNA
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PubMed Central
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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20 October 2018
Protein-independent Folding Pathway of the 16S rRNA 5′ Domain
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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2651837
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3 December 2018
Assembly of the 30S ribosomal subunit
1 reference
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PubMed
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https://pubmed.ncbi.nlm.nih.gov/18935976
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Rate determining step in the reconstitution of Escherichia coli 30S ribosomal subunits
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18935976
retrieved
12 December 2020
based on heuristic
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Distribution of protein and RNA in the 30S ribosomal subunit
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18935976
retrieved
12 December 2020
based on heuristic
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RNA tertiary structure and cooperative assembly of a large ribonucleoprotein complex
1 reference
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18935976
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
A conserved rRNA methyltransferase regulates ribosome biogenesis
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PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/18935976
retrieved
12 December 2020
based on heuristic
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Identifiers
DOI
10.1016/J.CBPA.2008.09.024
1 reference
stated in
Europe PubMed Central
PMCID
2651837
retrieved
19 August 2017
PMCID
2651837
1 reference
stated in
Europe PubMed Central
PMCID
2651837
retrieved
19 August 2017
PubMed ID
18935976
1 reference
stated in
Europe PubMed Central
PMCID
2651837
retrieved
19 August 2017
ResearchGate publication ID
23399563
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