(Q37346412)

English

AdoMet radical proteins--from structure to evolution--alignment of divergent protein sequences reveals strong secondary structure element conservation

scientific article published on 02 August 2004

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scholarly article

1 reference

Europe PubMed Central

19 August 2017

AdoMet radical proteins--from structure to evolution--alignment of divergent protein sequences reveals strong secondary structure element conservation (English)

1 reference

Europe PubMed Central

19 August 2017

protein evolution

0 references

protein structure

0 references

sequence alignment

1 reference

based on heuristic

inferred from title

author name string

Yvain Nicolet

1

1 reference

Europe PubMed Central

19 August 2017

Catherine L Drennan

2

1 reference

Europe PubMed Central

19 August 2017

language of work or name

0 references

publication date

2 August 2004

1 reference

Europe PubMed Central

19 August 2017

number of pages

11

1 reference

based on heuristic

inferred from page(s)

Nucleic Acids Research

1 reference

Europe PubMed Central

19 August 2017

32

1 reference

Europe PubMed Central

19 August 2017

13

1 reference

Europe PubMed Central

19 August 2017

4015-4025

1 reference

Europe PubMed Central

19 August 2017

Crystal structure of biotin synthase, an S-adenosylmethionine-dependent radical enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Crystal structure of coproporphyrinogen III oxidase reveals cofactor geometry of Radical SAM enzymes

1 reference

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Identification of the 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase required for coenzyme F(420) biosynthesis

1 reference

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6 September 2017

Many paths to methyltransfer: a chronicle of convergence

1 reference

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6 September 2017

ExPASy: The proteomics server for in-depth protein knowledge and analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

ESPript/ENDscript: Extracting and rendering sequence and 3D information from atomic structures of proteins

1 reference

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Evolution of function in (β/α)8-barrel enzymes

1 reference

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The generation of 5′-deoxyadenosyl radicals by adenosylmethionine-dependent radical enzymes

1 reference

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Deoxyribonucleotide synthesis in anaerobic microorganisms: the class III ribonucleotide reductase

1 reference

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Oxygen-independent coproporphyrinogen-III oxidase HemN from Escherichia coli

1 reference

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6 September 2017

A common evolutionary origin of two elementary enzyme folds

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

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Ribonucleotide reductases: the evolution of allosteric regulation

1 reference

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6 September 2017

Radical mechanisms of S-adenosylmethionine-dependent enzymes

1 reference

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6 September 2017

Adenosylmethionine as a source of 5'-deoxyadenosyl radicals

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Adenosylmethionine-dependent iron-sulfur enzymes: versatile clusters in a radical new role

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

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Tiny TIM: a small, tetrameric, hyperthermostable triosephosphate isomerase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Radical SAM, a novel protein superfamily linking unresolved steps in familiar biosynthetic pathways with radical mechanisms: functional characterization using new analysis and information visualization methods

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Structural evidence for evolution of the beta/alpha barrel scaffold by gene duplication and fusion

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Mutagenesis of the proposed iron-sulfur cluster binding ligands in Escherichia coli biotin synthase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

Structure and mechanism of the glycyl radical enzyme pyruvate formate-lyase

1 reference

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6 September 2017

Pyruvate formate lyase is structurally homologous to type I ribonucleotide reductase

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

6 September 2017

ESPript: analysis of multiple sequence alignments in PostScript

1 reference

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6 September 2017

Biochemical and genetic characterization of benzylsuccinate synthase from Thauera aromatica: a new glycyl radical enzyme catalysing the first step in anaerobic toluene metabolism.

1 reference

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Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

1 reference

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AlF3 mimics the transition state of protein phosphorylation in the crystal structure of nucleoside diphosphate kinase and MgADP

1 reference

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CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice

1 reference

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6 September 2017

Dictionary of protein secondary structure: pattern recognition of hydrogen-bonded and geometrical features

1 reference

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6 September 2017

An anchoring role for FeS clusters: chelation of the amino acid moiety of S-adenosylmethionine to the unique iron site of the [4Fe-4S] cluster of pyruvate formate-lyase activating enzyme

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=506812

2 September 2018

The iron-sulfur center of biotin synthase: site-directed mutants

1 reference

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2 September 2018

The anaerobic ribonucleotide reductase from Lactococcus lactis. Interactions between the two proteins NrdD and NrdG.

1 reference

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2 September 2018

Structural and mechanistic comparison of prokaryotic and eukaryotic phosphoinositide-specific phospholipases C

1 reference

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20 October 2018

1 reference

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3 December 2018

A Glycyl Radical Site in the Crystal Structure of a Class III Ribonucleotide Reductase

1 reference

https://pubmed.ncbi.nlm.nih.gov/15289575

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

The activating component of the anaerobic ribonucleotide reductase from Escherichia coli. An iron-sulfur center with only three cysteines

1 reference

https://pubmed.ncbi.nlm.nih.gov/15289575

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1093/NAR/GKH728

1 reference

Europe PubMed Central

19 August 2017

1 reference

Europe PubMed Central

19 August 2017

1 reference

Europe PubMed Central

19 August 2017

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