(Q37372651)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18619975%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

title

Extensive conformational transitions are required to turn on ATP hydrolysis in myosin (English)

1 reference

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10 January 2020

2

1 reference

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10 January 2020

author name string

Yang Yang

series ordinal

1

1 reference

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10 January 2020

Qiang Cui

series ordinal

3

1 reference

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10 January 2020

language of work or name

English

0 references

publication date

1 July 2008

1 reference

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Journal of Molecular Biology

10 January 2020

published in

1 reference

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10 January 2020

volume

381

1 reference

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10 January 2020

issue

5

1 reference

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10 January 2020

page(s)

1407-1420

1 reference

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All-atom empirical potential for molecular modeling and dynamics studies of proteins

10 January 2020

cites work

1 reference

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6 September 2017

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Mechanism of the myosin catalyzed hydrolysis of ATP as rationalized by molecular modeling

6 September 2017

1 reference

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Mechanochemical coupling in the myosin motor domain. II. Analysis of critical residues

6 September 2017

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Mechanochemical coupling in the myosin motor domain. I. Insights from equilibrium active-site simulations

6 September 2017

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Enzymatic mechanisms of phosphate and sulfate transfer.

6 September 2017

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An NMR perspective on enzyme dynamics

6 September 2017

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The molecular mechanism of muscle contraction.

6 September 2017

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Structural mechanism of the recovery stroke in the myosin molecular motor

6 September 2017

1 reference

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Biomolecular motors: the F1-ATPase paradigm

6 September 2017

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ModLoop: automated modeling of loops in protein structures

6 September 2017

1 reference

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Catalysis and specificity in enzymes: a study of triosephosphate isomerase and comparison with methyl glyoxal synthase

6 September 2017

1 reference

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A perspective on enzyme catalysis.

6 September 2017

1 reference

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6 September 2017

1 reference

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Early stages of energy transduction by myosin: roles of Arg in switch I, of Glu in switch II, and of the salt-bridge between them

6 September 2017

1 reference

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Quantum mechanical methods for enzyme kinetics

6 September 2017

1 reference

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Kinetic resolution of a conformational transition and the ATP hydrolysis step using relaxation methods with a Dictyostelium myosin II mutant containing a single tryptophan residue

6 September 2017

1 reference

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A general model for nucleic acid helicases and their "coupling" within macromolecular machines

6 September 2017

1 reference

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Modeling of loops in protein structures

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

X-ray structures of the apo and MgATP-bound states of Dictyostelium discoideum myosin motor domain

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Structural mechanism of muscle contraction.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

The way things move: looking under the hood of molecular motor proteins

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Is cooperative oxygen binding by hemoglobin really understood?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Mechanistic alternatives in phosphate monoester hydrolysis: what conclusions can be drawn from available experimental data?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Single-molecule enzymatic dynamics

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Energy transduction in the F1 motor of ATP synthase

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

The structural basis of the myosin ATPase activity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

X-ray structure of the magnesium(II).ADP.vanadate complex of the Dictyostelium discoideum myosin motor domain to 1.9 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Three-dimensional structure of myosin subfragment-1: a molecular motor

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Structure-specific model of hemoglobin cooperativity

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Theoretical studies of enzymic reactions: dielectric, electrostatic and steric stabilization of the carbonium ion in the reaction of lysozyme

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Kinetic Analysis of ATPase Mechanisms

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

How does GAP catalyze the GTPase reaction of Ras? A computer simulation study

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Proton transfer in carbonic anhydrase is controlled by electrostatics rather than the orientation of the acceptor

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Extension of the self-consistent-charge density-functional tight-binding method: third-order expansion of the density functional theory total energy and introduction of a modified effective coulomb interaction

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Optimized atomic radii for protein continuum electrostatics solvation forces.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Insights into the chemomechanical coupling of the myosin motor from simulation of its ATP hydrolysis mechanism.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

QCRNA 1.0: a database of quantum calculations for RNA catalysis

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Development of effective quantum mechanical/molecular mechanical (QM/MM) methods for complex biological processes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Specific parametrisation of a hybrid potential to simulate reactions in phosphatases.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Reliable treatment of electrostatics in combined QM/MM simulation of macromolecules

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Requirement of domain-domain interaction for conformational change and functional ATP hydrolysis in myosin

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Modeling zinc in biomolecules with the self consistent charge-density functional tight binding (SCC-DFTB) method: applications to structural and energetic analysis

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Dictyostelium myosin II mutations that uncouple the converter swing and ATP hydrolysis cycle

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Resolution of conformational states of Dictyostelium myosin II motor domain using tryptophan (W501) mutants: implications for the open-closed transition identified by crystallography.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

A FRET-based sensor reveals large ATP hydrolysis-induced conformational changes and three distinct states of the molecular motor myosin

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

Polar hydrogen positions in proteins: Empirical energy placement and neutron diffraction comparison

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2756066

A Critical Evaluation of Different QM/MM Frontier Treatments with SCC-DFTB as the QM Method

3 December 2018

1 reference

12 December 2020

Mapping the transition state for ATP hydrolysis: implications for enzymatic catalysis

1 reference

12 December 2020

Solvent effects on protein motion and protein effects on solvent motion. Dynamics of the active site region of lysozyme

1 reference

12 December 2020

The structural coupling between ATPase activation and recovery stroke in the myosin II motor

1 reference

12 December 2020

Simulations of the myosin II motor reveal a nucleotide-state sensing element that controls the recovery stroke

1 reference

12 December 2020

Muscle contraction and free energy transduction in biological systems

1 reference

12 December 2020

Pyruvate kinase: is the mechanism of phospho transfer associative or dissociative?

1 reference

12 December 2020

Alanine scanning mutagenesis of the switch I region in the ATPase site of Dictyostelium discoideum myosin II

1 reference

12 December 2020

Effects of mutations in the gamma-phosphate binding site of myosin on its motor function

1 reference

12 December 2020

10.1016/J.JMB.2008.06.071

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18619975%20AND%20SRC:MED&resulttype=core&format=json

release_3u55tinrjjfpdfujkmgy7a3tfq

10 January 2020

Fatcat ID

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/3u55tinrjjfpdfujkmgy7a3tfq

24 November 2022

mapped directly with Wikidata item

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:18619975%20AND%20SRC:MED&resulttype=core&format=json

10 January 2020

PubMed publication ID

18619975

1 reference