(Q37397660)

20 August 2017

Exploration of effective potential landscapes using coarse reverse integration (English)

1 reference

20 August 2017

Gerhard Hummer

2

0 references

author name string

Thomas A Frewen

series ordinal

1

1 reference

20 August 2017

Ioannis G Kevrekidis

series ordinal

3

1 reference

20 August 2017

language of work or name

English

0 references

publication date

1 October 2009

1 reference

Journal of Chemical Physics

20 August 2017

1 reference

20 August 2017

131

1 reference

20 August 2017

13

1 reference

20 August 2017

134104

1 reference

Inherent noise can facilitate coherence in collective swarm motion.

20 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Water pulls the strings in hydrophobic polymer collapse

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Low-dimensional, free-energy landscapes of protein-folding reactions by nonlinear dimensionality reduction

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Geometric diffusions as a tool for harmonic analysis and structure definition of data: diffusion maps.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Reaction coordinates and rates from transition paths

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

A growing string method for determining transition states: comparison to the nudged elastic band and string methods

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Escaping free-energy minima

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Efficient, Multiple-Range Random Walk Algorithm to Calculate the Density of States

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Local elevation: a method for improving the searching properties of molecular dynamics simulation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Navigating the folding routes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Finite temperature string method for the study of rare events.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Exploring the free-energy landscape of a short peptide using an average force

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

The numerical stability of leaping methods for stochastic simulation of chemically reacting systems

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

A doubly nudged elastic band method for finding transition states.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Conformational equilibria of terminally blocked single amino acids at the water-hexane interface. A molecular dynamics study

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

Analysis of time series from stochastic processes

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2766410

A dimer method for finding saddle points on high dimensional potential surfaces using only first derivatives

2 September 2018

1 reference

String method for the study of rare events

21 January 2018

1 reference

Exact stochastic simulation of coupled chemical reactions

21 January 2018

1 reference

Approximate accelerated stochastic simulation of chemically reacting systems

21 January 2018

1 reference

Nudged elastic band method for finding minimum energy paths of transitions

21 January 2018

1 reference

Coarse molecular dynamics of a peptide fragment: Free energy, kinetics, and long-time dynamics computations

21 January 2018

1 reference

Equation-free: The computer-aided analysis of complex multiscale systems

21 January 2018

1 reference

Position-dependent diffusion coefficients and free energies from Bayesian analysis of equilibrium and replica molecular dynamics simulations

21 January 2018

1 reference

Statistical thermodynamics. Taking a walk on a landscape

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19814540

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Large-amplitude nonlinear motions in proteins

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19814540

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1063/1.3207882

1 reference

20 August 2017

1 reference

1 reference

20 August 2017

PubMed publication ID

19814540

1 reference