(Q37399067)

20 August 2017

1 reference

title

ATG systems from the protein structural point of view (English)

1 reference

20 August 2017

2

Yoshinori Ohsumi

0 references

Nobuo N. Noda

object named as

Nobuo N Noda

series ordinal

1

0 references

Fuyuhiko Inagaki

series ordinal

3

object named as

Fuyuhiko Inagaki

1 reference

20 August 2017

publication date

1 April 2009

1 reference

20 August 2017

1 reference

20 August 2017

volume

109

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20 August 2017

issue

4

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20 August 2017

page(s)

1587-1598

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LC3, a mammalian homologue of yeast Apg8p, is localized in autophagosome membranes after processing

20 August 2017

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Atg27 is required for autophagy-dependent cycling of Atg9

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Cytoplasm to vacuole trafficking of aminopeptidase I requires a t-SNARE-Sec1p complex composed of Tlg2p and Vps45p

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Human autophagins, a family of cysteine proteinases potentially implicated in cell degradation by autophagy

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Formation process of autophagosome is traced with Apg8/Aut7p in yeast

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Ubiquitin: structures, functions, mechanisms

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Organization of the pre-autophagosomal structure responsible for autophagosome formation

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Insights into E3 ligase activity revealed by a SUMO-RanGAP1-Ubc9-Nup358 complex

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12 October 2022

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Toward unraveling membrane biogenesis in mammalian autophagy

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Golgi-resident small GTPase Rab33B interacts with Atg16L and modulates autophagosome formation

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

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12 October 2022

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Atg17 functions in cooperation with Atg1 and Atg13 in yeast autophagy

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Reactive oxygen species are essential for autophagy and specifically regulate the activity of Atg4

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Atg9 sorting from mitochondria is impaired in early secretion and VFT-complex mutants in Saccharomyces cerevisiae

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The crystal structure of Atg3, an autophagy-related ubiquitin carrier protein (E2) enzyme that mediates Atg8 lipidation

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

p62/SQSTM1 binds directly to Atg8/LC3 to facilitate degradation of ubiquitinated protein aggregates by autophagy

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The pre-autophagosomal structure organized by concerted functions of APG genes is essential for autophagosome formation

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Crystal structure of Ufc1, the Ufm1-conjugating enzyme

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The reversible modification regulates the membrane-binding state of Apg8/Aut7 essential for autophagy and the cytoplasm to vacuole targeting pathway

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Identification of essential residues for the C-terminal cleavage of the mammalian LC3: a lesson from yeast Atg8.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The Atg18-Atg2 complex is recruited to autophagic membranes via phosphatidylinositol 3-phosphate and exerts an essential function

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Aminopeptidase I of Saccharomyces cerevisiae is localized to the vacuole independent of the secretory pathway

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Interaction codes within the family of mammalian Phox and Bem1p domain-containing proteins

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Mechanism of ubiquitin activation revealed by the structure of a bacterial MoeB-MoaD complex

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12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

A ubiquitin-like system mediates protein lipidation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The Atg1 kinase complex is involved in the regulation of protein recruitment to initiate sequestering vesicle formation for nonspecific autophagy in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Quantitative analysis of autophagy-related protein stoichiometry by fluorescence microscopy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Characterization of a novel autophagy-specific gene, ATG29.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

In vivo and in vitro reconstitution of Atg8 conjugation essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Atg8, a ubiquitin-like protein required for autophagosome formation, mediates membrane tethering and hemifusion

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy in development and stress responses of plants

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

p62/SQSTM1 forms protein aggregates degraded by autophagy and has a protective effect on huntingtin-induced cell death

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The crystal structure of microtubule-associated protein light chain 3, a mammalian homologue of Saccharomyces cerevisiae Atg8.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis for ubiquitin recognition and autoubiquitination by Rabex-5.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The X-ray crystal structure and putative ligand-derived peptide binding properties of gamma-aminobutyric acid receptor type A receptor-associated protein

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure of Atg5.Atg16, a complex essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Atg8 controls phagophore expansion during autophagosome formation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg2 is a novel protein required for the cytoplasm to vacuole targeting, autophagy, and pexophagy pathways

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Isolation and characterization of yeast mutants in the cytoplasm to vacuole protein targeting pathway

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis of target recognition by Atg8/LC3 during selective autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg13p and Vac8p are part of a complex of phosphoproteins that are required for cytoplasm to vacuole targeting

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Assortment of phosphatidylinositol 3-kinase complexes--Atg14p directs association of complex I to the pre-autophagosomal structure in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure of a herpesvirus-encoded cysteine protease reveals a unique class of deubiquitinating enzymes

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg1p, a novel protein kinase required for the autophagic process in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Direct interactions between NEDD8 and ubiquitin E2 conjugating enzymes upregulate cullin-based E3 ligase activity.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

p62, a phosphotyrosine-independent ligand of the SH2 domain of p56lck, belongs to a new class of ubiquitin-binding proteins

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg16p is required for the function of the Apg12p-Apg5p conjugate in the yeast autophagy pathway

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The structure of the APPBP1-UBA3-NEDD8-ATP complex reveals the basis for selective ubiquitin-like protein activation by an E1

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Crystal structure of a UBP-family deubiquitinating enzyme in isolation and in complex with ubiquitin aldehyde

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The C-terminal region of an Apg7p/Cvt2p is required for homodimerization and is essential for its E1 activity and E1-E2 complex formation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Molecular machinery of autophagosome formation in yeast, Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The crystal structure of human Atg4b, a processing and de-conjugating enzyme for autophagosome-forming modifiers

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The Atg1-Atg13 complex regulates Atg9 and Atg23 retrieval transport from the pre-autophagosomal structure

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

NEDD8 recruits E2-ubiquitin to SCF E3 ligase.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis for the specificity and catalysis of human Atg4B responsible for mammalian autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure of GATE-16, membrane transport modulator and mammalian ortholog of autophagocytosis factor Aut7p

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Taking it step by step: mechanistic insights from structural studies of ubiquitin/ubiquitin-like protein modification pathways

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Atg11 links cargo to the vesicle-forming machinery in the cytoplasm to vacuole targeting pathway

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The N-terminus and Phe52 residue of LC3 recruit p62/SQSTM1 into autophagosomes

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Isolation and characterization of autophagy-defective mutants of Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural analysis of Escherichia coli ThiF.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Mouse Apg16L, a novel WD-repeat protein, targets to the autophagic isolation membrane with the Apg12-Apg5 conjugate

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagosomes: biogenesis from scratch?

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

In vitro reconstitution of plant Atg8 and Atg12 conjugation systems essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Transport of phosphatidylinositol 3-phosphate into the vacuole via autophagic membranes in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Lysosomal turnover of GABARAP-phospholipid conjugate is activated during differentiation of C2C12 cells to myotubes without inactivation of the mTor kinase-signaling pathway.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy: process and function

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Crystal structure of the ubiquitin binding domains of rabex-5 reveals two modes of interaction with ubiquitin

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Two novel ubiquitin-fold modifier 1 (Ufm1)-specific proteases, UfSP1 and UfSP2

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis for Ufm1 processing by UfSP1

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Human light chain 3/MAP1LC3B is cleaved at its carboxyl-terminal Met121 to expose Gly120 for lipidation and targeting to autophagosomal membranes

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis for sorting mechanism of p62 in selective autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Two newly identified sites in the ubiquitin-like protein Atg8 are essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

GATE-16, a membrane transport modulator, interacts with NSF and the Golgi v-SNARE GOS-28

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure of GABARAP in two conformations: implications for GABA(A) receptor localization and tubulin binding

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Physiological pH and acidic phospholipids contribute to substrate specificity in lipidation of Atg8.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure and functional interactions of the Tsg101 UEV domain

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg14p and Apg6/Vps30p form a protein complex essential for autophagy in the yeast, Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Cis1/Atg31 is required for autophagosome formation in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg10p, a novel protein-conjugating enzyme essential for autophagy in yeast.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

A single protease, Apg4B, is specific for the autophagy-related ubiquitin-like proteins GATE-16, MAP1-LC3, GABARAP, and Apg8L

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Analyses of APG13 gene involved in autophagy in yeast, Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Plant autophagy--more than a starvation response

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Hierarchy of Atg proteins in pre-autophagosomal structure organization

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg9p/Cvt7p is an integral membrane protein required for transport vesicle formation in the Cvt and autophagy pathways

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

SUMO junction-what's your function? New insights through SUMO-interacting motifs

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Crystal structure of the GABAA-receptor-associated protein, GABARAP

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Tor-mediated induction of autophagy via an Apg1 protein kinase complex

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Two distinct Vps34 phosphatidylinositol 3-kinase complexes function in autophagy and carboxypeptidase Y sorting in Saccharomyces cerevisiae

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Dissection of autophagosome biogenesis into distinct nucleation and expansion steps

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Mechanism of cargo selection in the cytoplasm to vacuole targeting pathway

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

LC3 conjugation system in mammalian autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Basis for a ubiquitin-like protein thioester switch toggling E1–E2 affinity

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structures of the SUMO E1 provide mechanistic insights into SUMO activation and E2 recruitment to E1

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The crystal structure of plant ATG12 and its biological implication in autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy in the Pathogenesis of Disease

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure-function relationship of Atg12, a ubiquitin-like modifier essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Insights into the ubiquitin transfer cascade from the structure of the activating enzyme for NEDD8

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

GABA(A)-receptor-associated protein links GABA(A) receptors and the cytoskeleton

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Crystal structure of a deubiquitinating enzyme (human UCH-L3) at 1.8 A resolution

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Apg2p functions in autophagosome formation on the perivacuolar structure

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy is essential for preimplantation development of mouse embryos

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

LC3, GABARAP and GATE16 localize to autophagosomal membrane depending on form-II formation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The Atg12-Atg5 conjugate has a novel E3-like activity for protein lipidation in autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

A Unified Nomenclature for Yeast Autophagy-Related Genes

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Solution structure of microtubule-associated protein light chain 3 and identification of its functional subdomains

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagosome formation: core machinery and adaptations

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Solution structure of human GABA(A) receptor-associated protein GABARAP: implications for biolgoical funcrion and its regulation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

GATE-16 and GABARAP are authentic modifiers mediated by Apg7 and Apg3

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

The Atg16L complex specifies the site of LC3 lipidation for membrane biogenesis in autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Vacuolar import of proteins and organelles from the cytoplasm

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Cvt19 is a receptor for the cytoplasm-to-vacuole targeting pathway.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Convergence of multiple autophagy and cytoplasm to vacuole targeting components to a perivacuolar membrane compartment prior to de novo vesicle formation

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structural basis for recruitment of Ubc12 by an E2 binding domain in NEDD8's E1

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Molecular dissection of autophagy: two ubiquitin-like systems

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Alignment/phylogeny of the papain superfamily of cysteine proteases.

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy in yeast demonstrated with proteinase-deficient mutants and conditions for its induction

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Dissection of autophagosome formation using Apg5-deficient mouse embryonic stem cells

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Identification of seven new humanMHC class I region genes around theHLA-F locus

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Phosphatidylserine in addition to phosphatidylethanolamine is an in vitro target of the mammalian Atg8 modifiers, LC3, GABARAP, and GATE-16

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Structure of a conjugating enzyme-ubiquitin thiolester intermediate reveals a novel role for the ubiquitin tail

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Homeostatic levels of p62 control cytoplasmic inclusion body formation in autophagy-deficient mice

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy fights disease through cellular self-digestion

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Autophagy and the cytoplasm to vacuole targeting pathway both require Aut10p

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

A protein conjugation system essential for autophagy

1 reference

12 October 2022

https://opencitations.net/index/coci/api/v1/references/10.1021/CR800459R

Identifiers

DOI

10.1021/CR800459R

1 reference

20 August 2017

1 reference