(Q37402873)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

title

A sequence element that tunes Escherichia coli tRNA(Ala)(GGC) to ensure accurate decoding (English)

1 reference

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24 January 2020

0 references

2

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24 January 2020

author name string

Sarah Ledoux

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

Olke C Uhlenbeck

series ordinal

3

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24 January 2020

publication date

22 March 2009

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

Nature Structural & Molecular Biology

24 January 2020

published in

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24 January 2020

volume

16

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24 January 2020

issue

4

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24 January 2020

page(s)

359-364

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

Slow peptide bond formation by proline and other N-alkylamino acids in translation

24 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Recognition of aminoacyl-tRNA: a common molecular mechanism revealed by cryo-EM

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Different aa-tRNAs are selected uniformly on the ribosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

[3'-32P]-labeling tRNA with nucleotidyltransferase for assaying aminoacylation and peptide bond formation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

The 51-63 base pair of tRNA confers specificity for binding by EF-Tu

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Structure of the 70S ribosome complexed with mRNA and tRNA

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Alignment/misalignment hypothesis for tRNA selection by the ribosome

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

tRNA residues that have coevolved with their anticodon to ensure uniform and accurate codon recognition.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Selection of tRNA by the ribosome requires a transition from an open to a closed form

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Ribosome interactions of aminoacyl-tRNA and elongation factor Tu in the codon-recognition complex

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Cryo-EM reveals an active role for aminoacyl-tRNA in the accommodation process

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Uniform binding of aminoacyl-tRNAs to elongation factor Tu by thermodynamic compensation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Improvement of reading frame maintenance is a common function for several tRNA modifications

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Crystal structure of the ribosome at 5.5 A resolution

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Transfer RNA modification: influence on translational frameshifting and metabolism

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

The importance of tRNA backbone-mediated interactions with synthetase for aminoacylation

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Compilation of tRNA sequences and sequences of tRNA genes

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Relative affinities of all Escherichia coli aminoacyl-tRNAs for elongation factor Tu-GTP

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Isolation and nucleotide sequence analysis of tRNAAlaGGC from Escherichia coli K-12.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Biochemical and physical characterization of an unmodified yeast phenylalanine transfer RNA transcribed in vitro

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Highly conserved modified nucleosides influence Mg2+-dependent tRNA folding

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Mg2+ binding and structural stability of mature and in vitro synthesized unmodified Escherichia coli tRNAPhe

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Anticodon-dependent conservation of bacterial tRNA gene sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

An active role for tRNA in decoding beyond codon:anticodon pairing

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

A functional pseudoknot in 16S ribosomal RNA

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

The modified wobble nucleoside uridine-5-oxyacetic acid in tRNAPro(cmo5UGG) promotes reading of all four proline codons in vivo

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Conformational switch in the decoding region of 16S rRNA during aminoacyl-tRNA selection on the ribosome.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Induced fit in initial selection and proofreading of aminoacyl-tRNA on the ribosome

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Mutations which alter the elbow region of tRNA2Gly reduce T4 gene 60 translational bypassing efficiency.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Complete kinetic mechanism of elongation factor Tu-dependent binding of aminoacyl-tRNA to the A site of the E. coli ribosome

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

tRNA(2Gln) mutants that translate the CGA arginine codon as glutamine in Escherichia coli

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Structural alterations far from the anticodon of the tRNAProGGG of Salmonella typhimurium induce +1 frameshifting at the peptidyl-site.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

An engineered Tetrahymena tRNAGln for in vivo incorporation of unnatural amino acids into proteins by nonsense suppression.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

The translational efficiency of tRNA is a property of the anticodon arm.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Role of tRNA modification in translational fidelity

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

ms2i6A deficiency enhances proofreading in translation

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

A uniform response to mismatches in codon-anticodon complexes ensures ribosomal fidelity.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Uniform binding of aminoacylated transfer RNAs to the ribosomal A and P sites.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Kinetic determinants of high-fidelity tRNA discrimination on the ribosome

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Essential role of histidine 84 in elongation factor Tu for the chemical step of GTP hydrolysis on the ribosome

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

Glycine codon discrimination and the nucleotide in position 32 of the anticodon loop.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2769084

The modification of the wobble base of tRNAGlu modulates the translation rate of glutamic acid codons in vivo

2 September 2018

1 reference

Functional evidence for indirect recognition of G.U in tRNA(Ala) by alanyl-tRNA synthetase

31 March 2020

1 reference

Idiosyncratic tuning of tRNAs to achieve uniform ribosome binding

31 March 2020

1 reference

Conformational transitions of an unmodified tRNA: implications for RNA folding

31 March 2020

1 reference

Codon Reading by tRNAAla with Modified Uridine in the Wobble Position

31 March 2020

1 reference

Bases in the anticodon loop of tRNA(Ala)(GGC) prevent misreading

31 March 2020

1 reference

31 March 2020

Identifiers

DOI

10.1038/NSMB.1581

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json

24 January 2020

PubMed publication ID

19305403

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19305403%20AND%20SRC:MED&resulttype=core&format=json