(Q37429886)

20 August 2017

Genetic Drivers of Epigenetic and Transcriptional Variation in Human Immune Cells (English)

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20 August 2017

18

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39

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58

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63

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76

Nicole Soranzo

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Marie-Laure Yaspo

64

Marie-Laure Yaspo

1 reference

20 August 2017

Avik Datta

11

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John J Lambourne

John J Lambourne

21

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John A Morris

John A Morris

49

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Diego Garrido-Martín

Diego Garrido-Martín

6

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Kousik Kundu

Kousik Kundu

9

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Valentina Iotchkova

Valentina Iotchkova

41

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Simone Ecker

Simone Ecker

10

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Warren A. Cheung

Warren Cheung

33

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Daniel Mead

Daniel Mead

14

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Dirk S Paul

Dirk S Paul

71

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Frederik Otzen Bagger

Frederik O Bagger

38

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Augusto Rendon

Augusto Rendon

53

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Daniel Rico

Daniel Rico

67

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Oliver Stegle

Oliver Stegle

73

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Hans Lehrach

44

Hans Lehrach

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20 August 2017

28

Guillaume Bourque

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20 August 2017

Alice L Mann

15

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Roderic Guigó i Serra

66

Roderic Guigo

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20 August 2017

69

Willem H Ouwehand

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20 August 2017

70

Taco W Kuijpers

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20 August 2017

1

Lu Chen

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Hendrik Gerard Stunnenberg

20 August 2017

72

Hendrik G Stunnenberg

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20 August 2017

45

Ernesto Lowy

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20 August 2017

19

Samantha Farrow

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20 August 2017

74

Kate Downes

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20 August 2017

61

Mattia Frontini

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20 August 2017

Emmanouil Dermitzakis

35

Emmanouil T Dermitzakis

1 reference

20 August 2017

57

Marc Sultan

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20 August 2017

36

Heather Elding

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20 August 2017

68

Joost H A Martens

1 reference

20 August 2017

26

Kim Berentsen

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20 August 2017

27

Lorenzo Bomba

1 reference

20 August 2017

40

Ehsan Habibi

1 reference

20 August 2017

42

Eva Janssen-Megens

1 reference

20 August 2017

43

Bowon Kim

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20 August 2017

46

Amit Mandoli

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20 August 2017

50

Vera Pancaldi

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20 August 2017

51

Farzin Pourfarzad

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20 August 2017

55

Nilofar Sharifi

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20 August 2017

59

Klaudia Walter

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20 August 2017

75

Tomi Pastinen

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20 August 2017

Bing Ge

2

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20 August 2017

Francesco Paolo Casale

3

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20 August 2017

Louella Vasquez

4

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20 August 2017

Tony Kwan

5

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20 August 2017

Stephen Watt

7

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20 August 2017

Ying Yan

8

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20 August 2017

David Richardson

12

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20 August 2017

Frances Burden

13

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20 August 2017

Jose Maria Fernandez

16

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20 August 2017

Sophia Rowlston

17

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20 August 2017

Xiaojian Shao

20

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20 August 2017

Adriana Redensek

22

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20 August 2017

Cornelis A Albers

23

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20 August 2017

Vyacheslav Amstislavskiy

24

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20 August 2017

Sofie Ashford

25

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20 August 2017

David Bujold

29

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20 August 2017

Stephan Busche

30

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20 August 2017

Maxime Caron

31

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20 August 2017

Shu-Huang Chen

32

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20 August 2017

Oliver Delaneau

34

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20 August 2017

Irina Colgiu

37

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20 August 2017

Filomena Matarese

47

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20 August 2017

Matthew T Maurano

48

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20 August 2017

Karola Rehnstrom

52

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20 August 2017

Thomas Risch

54

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20 August 2017

Marie-Michelle Simon

56

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20 August 2017

Shuang-Yin Wang

60

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20 August 2017

Stylianos E Antonarakis

62

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20 August 2017

Stephan Beck

65

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20 August 2017

language of work or name

English

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publication date

1 November 2016

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20 August 2017

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20 August 2017

167

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20 August 2017

1398-1414.e24

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20 August 2017

5

1 reference

describes a project that uses

20 August 2017

DESeq2

DESeq2

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

DESeq2

0 references

cites work

Detection and interpretation of shared genetic influences on 42 human traits

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genetic association analyses implicate aberrant regulation of innate and adaptive immunity genes in the pathogenesis of systemic lupus erythematosus.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genetic Control of Chromatin States in Humans Involves Local and Distal Chromosomal Interactions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Association analyses identify 38 susceptibility loci for inflammatory bowel disease and highlight shared genetic risk across populations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genomic modulators of gene expression in human neutrophils

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Characterization of functional methylomes by next-generation capture sequencing identifies novel disease-associated variants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Fine mapping of type 1 diabetes susceptibility loci and evidence for colocalization of causal variants with lymphoid gene enhancers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Integrative analysis of 111 reference human epigenomes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Moderated estimation of fold change and dispersion for RNA-seq data with DESeq2

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

The African Genome Variation Project shapes medical genetics in Africa

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genetic and epigenetic fine mapping of causal autoimmune disease variants

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Allelic expression mapping across cellular lineages to establish impact of non-coding SNPs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Transcriptional diversity during lineage commitment of human blood progenitors

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Identification of genetic variants associated with alternative splicing using sQTLseekeR.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Bayesian test for colocalisation between pairs of genetic association studies using summary statistics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Innate immune activity conditions the effect of regulatory variants upon monocyte gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genetics of rheumatoid arthritis contributes to biology and drug discovery

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

The NHGRI GWAS Catalog, a curated resource of SNP-trait associations

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

DNA methylation age of human tissues and cell types

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Characterizing the genetic basis of transcriptome diversity through RNA-sequencing of 922 individuals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Analysis of immune-related loci identifies 48 new susceptibility variants for multiple sclerosis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genome-wide signatures of differential DNA methylation in pediatric acute lymphoblastic leukemia

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Passive and active DNA methylation and the interplay with genetic variation in gene regulation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Low-level processing of Illumina Infinium DNA Methylation BeadArrays

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Host-microbe interactions have shaped the genetic architecture of inflammatory bowel disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

STAR: ultrafast universal RNA-seq aligner

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

GENCODE: the reference human genome annotation for The ENCODE Project

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Large-scale association analysis provides insights into the genetic architecture and pathophysiology of type 2 diabetes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Enhancers: emerging roles in cell fate specification

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

ChromHMM: automating chromatin-state discovery and characterization

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Using probabilistic estimation of expression residuals (PEER) to obtain increased power and interpretability of gene expression analyses

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

The sva package for removing batch effects and other unwanted variation in high-throughput experiments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

A statistical framework for SNP calling, mutation discovery, association mapping and population genetical parameter estimation from sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

A framework for variation discovery and genotyping using next-generation DNA sequencing data

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Removing batch effects in analysis of expression microarray data: an evaluation of six batch adjustment methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

The architecture of gene regulatory variation across multiple human tissues: the MuTHER study

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Meta-analysis identifies 29 additional ulcerative colitis risk loci, increasing the number of confirmed associations to 47

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

GCTA: a tool for genome-wide complex trait analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Genome-wide allele-specific analysis: insights into regulatory variation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Transcript assembly and quantification by RNA-Seq reveals unannotated transcripts and isoform switching during cell differentiation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Multiple common variants for celiac disease influencing immune gene expression

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Potential etiologic and functional implications of genome-wide association loci for human diseases and traits

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Fast and accurate short read alignment with Burrows-Wheeler transform

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Model-based analysis of ChIP-Seq (MACS)

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Accurate discovery of expression quantitative trait loci under confounding from spurious and genuine regulatory hotspots

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Essential roles for the Tec family kinases Tec and Btk in M-CSF receptor signaling pathways that regulate macrophage survival

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Efficient control of population structure in model organism association mapping

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Rapid and accurate haplotype phasing and missing-data inference for whole-genome association studies by use of localized haplotype clustering

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

PLINK: a tool set for whole-genome association and population-based linkage analyses

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Adjusting batch effects in microarray expression data using empirical Bayes methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

The role of Tec family kinases in myeloid cells

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Statistical significance for genomewide studies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

RNA splicing is a primary link between genetic variation and disease

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Fine-mapping cellular QTLs with RASQUAL and ATAC-seq

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

AHT-ChIP-seq: a completely automated robotic protocol for high-throughput chromatin immunoprecipitation

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Global patterns of cis variation in human cells revealed by high-density allelic expression analysis

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Efficient set tests for the genetic analysis of correlated traits.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

WASP: allele-specific software for robust molecular quantitative trait locus discovery

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Using the realized relationship matrix to disentangle confounding factors for the estimation of genetic variance components of complex traits

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

ASTALAVISTA: dynamic and flexible analysis of alternative splicing events in custom gene datasets

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Orchestrated intron retention regulates normal granulocyte differentiation.

26 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

Statistical comparison of methods to estimate the error probability in short-read Illumina sequencing.

2 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=5119954

From expression QTLs to personalized transcriptomics

2 September 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27863251

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Population Variation and Genetic Control of Modular Chromatin Architecture in Humans

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/27863251

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1016/J.CELL.2016.10.026

1 reference

20 August 2017

1 reference

20 August 2017

1 reference