(Q37452961)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

review article

1 reference

title

Identification of cis-regulatory elements in gene co-expression networks using A-GLAM (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

main subject

cis-regulatory element

1 reference

inferred from title

author

Leonardo Mariño-Ramírez

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

David Landsman

series ordinal

5

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

3

Olivier Bodenreider

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

4

John Spouge

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

2

Kannan Tharakaraman

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

language of work or name

English

0 references

publication date

1 January 2009

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

Methods in Molecular Biology

26 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

volume

541

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

page(s)

1-22

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

describes a project that uses

26 January 2020

Cytoscape

1 reference

9 June 2022

https://europepmc.org/search?query=(METHODS:'Cytoscape')

inferred from PubMed Central ID database lookup

cites work

Multiple independent evolutionary solutions to core histone gene regulation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Global regulation by the yeast Spt10 protein is mediated through chromatin structure and the histone upstream activating sequence elements.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

BiNGO: a Cytoscape plugin to assess overrepresentation of gene ontology categories in biological networks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Alignments anchored on genomic landmarks can aid in the identification of regulatory elements

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Evolutionary significance of gene expression divergence

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Assessing computational tools for the discovery of transcription factor binding sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Transcriptional regulatory code of a eukaryotic genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

WebLogo: A Sequence Logo Generator

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Unbiased mapping of transcription factor binding sites along human chromosomes 21 and 22 points to widespread regulation of noncoding RNAs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Statistical analysis of over-represented words in human promoter sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Cytoscape: a software environment for integrated models of biomolecular interaction networks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Investigating semantic similarity measures across the Gene Ontology: the relationship between sequence and annotation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

An automated method for finding molecular complexes in large protein interaction networks

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Comprehensive identification of cell cycle-regulated genes of the yeast Saccharomyces cerevisiae by microarray hybridization

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

A genome-wide transcriptional analysis of the mitotic cell cycle

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Gapped BLAST and PSI-BLAST: a new generation of protein database search programs

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Methods for calculating the probabilities of finding patterns in sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Sequence logos: a new way to display consensus sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Myc-binding-site recognition in the human genome is determined by chromatin context

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Unbiased location analysis of E2F1-binding sites suggests a widespread role for E2F1 in the human genome

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=2719765

Identification and analysis of eukaryotic promoters: recent computational approaches

23 August 2017

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19381547

12 December 2020

inferred from PubMed ID database lookup

Conservation and coevolution in the scale-free human gene coexpression network

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/19381547

12 December 2020

inferred from PubMed ID database lookup

Identifiers

DOI

10.1007/978-1-59745-243-4_1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19381547%20AND%20SRC:MED&resulttype=core&format=json

26 January 2020

1 reference