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Deforming DNA: from physics to biology.
scientific article published on July 2009
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1 reference
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Europe PubMed Central
PubMed publication ID
19492398
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
review article
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Europe PubMed Central
title
Deforming DNA: from physics to biology
(English)
1 reference
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Europe PubMed Central
PubMed publication ID
19492398
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
author
Masayuki Takahashi
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2
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Europe PubMed Central
PubMed publication ID
19492398
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29 January 2020
Richard Lavery
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3
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Europe PubMed Central
PubMed publication ID
19492398
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29 January 2020
author name string
Chantal Prévost
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1
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Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
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29 January 2020
publication date
1 July 2009
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PubMed publication ID
19492398
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29 January 2020
published in
ChemPhysChem
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Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
volume
10
1 reference
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Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
issue
9-10
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Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
page(s)
1399-1404
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Europe PubMed Central
PubMed publication ID
19492398
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retrieved
29 January 2020
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Overstretching B-DNA: the elastic response of individual double-stranded and single-stranded DNA molecules
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Molecular Dynamics Simulation of DNA Stretching Is Consistent with the Tension Observed for Extension and Strand Separation and Predicts a Novel Ladder Structure
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Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA.
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Force-induced melting of the DNA double helix 1. Thermodynamic analysis
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Force-induced melting of the DNA double helix. 2. Effect of solution conditions
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Salt dependence of the elasticity and overstretching transition of single DNA molecules
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Molecular force balance measurements reveal that double-stranded DNA unbinds under force in rate-dependent pathways
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DNA overstretching in the presence of glyoxal: structural evidence of force-induced DNA melting.
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Overstretching and force-driven strand separation of double-helix DNA
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There and (slowly) back again: entropy-driven hysteresis in a model of DNA overstretching
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7 January 2021
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The contribution of DNA single-stranded order to the thermodynamics of duplex formation
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Stretched and overwound DNA forms a Pauling-like structure with exposed bases
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7 January 2021
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7 January 2021
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DNA replication meets genetic exchange: chromosomal damage and its repair by homologous recombination
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7 January 2021
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Does a stretched DNA structure dictate the helical geometry of RecA-like filaments?
1 reference
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7 January 2021
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The helicity of DNA in complexes with recA protein
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Geometry of the DNA strands within the RecA nucleofilament: role in homologous recombination
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Force-induced structural transitions in cross-linked DNA films
1 reference
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Crossref
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure of RecA-DNA complexes studied by combination of linear dichroism and small-angle neutron scattering measurements on flow-oriented samples
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
An extended DNA structure through deoxyribose-base stacking induced by RecA protein
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
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inferred from DOI database lookup
Pf1 virus structure: helical coat protein and DNA with paraxial phosphates
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Structure models for DNA in filamentous viruses with phosphates near the center
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Sequence-specific recognition of double helical nucleic acids by proteins
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Intercalation, DNA kinking, and the control of transcription.
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Minor groove-binding architectural proteins: structure, function, and DNA recognition.
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Local DNA stretching mimics the distortion caused by the TATA box-binding protein
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Modeling DNA deformations induced by minor groove binding proteins
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Analyzing protein-DNA recognition mechanisms.
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Recognizing DNA
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
The structure of DNA in the nucleosome core
1 reference
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Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Spontaneous sharp bending of double-stranded DNA.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Cyclization of short DNA fragments and bending fluctuations of the double helix
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Kinking occurs during molecular dynamics simulations of small DNA minicircles.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Refinement of the AMBER force field for nucleic acids: improving the description of alpha/gamma conformers
1 reference
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Crossref
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https://api.crossref.org/works/10.1002%2FCPHC.200900253
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7 January 2021
based on heuristic
inferred from DOI database lookup
Molecular modelling of (A4T4NN)n and (T4A4NN)n: sequence elements responsible for curvature.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Exact theory of kinkable elastic polymers.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Localized single-stranded bubble mechanism for cyclization of short double helix DNA
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Biological consequences of tightly bent DNA: the other life of a macromolecular celebrity
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Effects of kink and flexible hinge defects on mechanical responses of short double-stranded DNA molecules.
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
VMD: visual molecular dynamics
1 reference
stated in
Crossref
reference URL
https://api.crossref.org/works/10.1002%2FCPHC.200900253
retrieved
7 January 2021
based on heuristic
inferred from DOI database lookup
Identifiers
DOI
10.1002/CPHC.200900253
1 reference
stated in
Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
PubMed publication ID
19492398
1 reference
stated in
Europe PubMed Central
PubMed publication ID
19492398
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:19492398%20AND%20SRC:MED&resulttype=core&format=json
retrieved
29 January 2020
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