(Q40319749)

19 September 2017

Molecular dynamics simulations of duplex stretching reveal the importance of entropy in determining the biomechanical properties of DNA. (English)

1 reference

19 September 2017

1 reference

1

Sarah A Harris

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19 September 2017

Zara A Sands

2

1 reference

19 September 2017

Charles A Laughton

series ordinal

3

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19 September 2017

language of work or name

English

0 references

publication date

30 December 2004

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19 September 2017

8

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inferred from page(s)

published in

Biophysical Journal

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19 September 2017

88

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19 September 2017

3

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19 September 2017

1684-1691

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The effect of force on thermodynamics and kinetics of single molecule reactions

19 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

A two-state kinetic model for the unfolding of single molecules by mechanical force

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Thermodynamics of DNA interactions from single molecule stretching experiments.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Temperature dependence of unbinding forces between complementary DNA strands

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Cooperativity in drug-DNA recognition: a molecular dynamics study

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Probing the relation between force--lifetime--and chemistry in single molecular bonds

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Entropy and heat capacity of DNA melting from temperature dependence of single molecule stretching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Force-induced melting of the DNA double helix. 2. Effect of solution conditions

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Force-induced melting of the DNA double helix 1. Thermodynamic analysis

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Model energy landscapes and the force-induced dissociation of ligand-receptor bonds

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Unbinding forces of single antibody-antigen complexes correlate with their thermal dissociation rates

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Native topology determines force-induced unfolding pathways in globular proteins

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Mechanical stability of single DNA molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Dynamic force spectroscopy of single DNA molecules

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Sequence-dependent mechanics of single DNA molecules.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Reconstructing potential energy functions from simulated force-induced unbinding processes

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Modelling extreme stretching of DNA.

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

The structure of an oligo(dA).oligo(dT) tract and its biological implications

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Defining the structure of irregular nucleic acids: conventions and principles

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Theory of high-force DNA stretching and overstretching

22 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Equilibrium information from nonequilibrium measurements in an experimental test of Jarzynski's equality

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Entropy calculations on the molten globule state of a protein: Side-chain entropies of α-lactalbumin

20 August 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=1305225

Structure, force, and energy of a double-stranded DNA oligonucleotide under tensile loads

2 December 2018

1 reference

12 December 2020

Modelling DNA stretching for physics and biology

1 reference

12 December 2020

Force-induced melting of a short DNA double helix

1 reference

12 December 2020

DNA stretching and compression: large-scale simulations of double helical structures

1 reference

12 December 2020

10.1529/BIOPHYSJ.104.046912

Identifiers

DOI

1 reference

release_2c4w3gg2mvdxrcmwcok4bjtfoa

19 September 2017

1 reference

Fatcat

https://api.fatcat.wiki/v0/release/2c4w3gg2mvdxrcmwcok4bjtfoa

24 November 2022

mapped directly with Wikidata item

1 reference

19 September 2017

1 reference