(Q37561100)

21 August 2017

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title

Sequencing primate genomes: what have we learned? (English)

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21 August 2017

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1

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

3

Evan E Eichler

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

author name string

Oliver A Ryder

series ordinal

2

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

publication date

1 January 2009

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Annual Review of Genomics and Human Genetics

21 August 2017

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

volume

10

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

page(s)

355-386

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

Hybrid zones and the genetic architecture of a barrier to gene flow between two sunflower species

15 May 2020

cites work

1 reference

12 December 2020

Alu repeats and human disease

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12 December 2020

Extensive nuclear DNA sequence diversity among chimpanzees

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12 December 2020

Evolution at two levels in humans and chimpanzees

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12 December 2020

Genetic differences between humans and great apes

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12 December 2020

Genomic divergences between humans and other hominoids and the effective population size of the common ancestor of humans and chimpanzees

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12 December 2020

Great ape DNA sequences reveal a reduced diversity and an expansion in humans

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12 December 2020

Initial sequencing and analysis of the human genome

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12 December 2020

Episodic evolution of pyrin in primates: human mutations recapitulate ancestral amino acid states

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12 December 2020

Positive selection of a gene family during the emergence of humans and African apes

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12 December 2020

Chromosomal inversions and the reproductive isolation of species

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12 December 2020

1 reference

12 December 2020

Recent duplication, domain accretion and the dynamic mutation of the human genome

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12 December 2020

High levels of Y-chromosome nucleotide diversity in the genus Pan.

1 reference

12 December 2020

Paternally inherited HLA alleles are associated with women's choice of male odor

1 reference

12 December 2020

Signal Transduction and the Control of Gene Expression

1 reference

12 December 2020

Testing for genetic evidence of population expansion and contraction: an empirical analysis of microsatellite DNA variation using a hierarchical Bayesian model

1 reference

12 December 2020

Modern African ape populations as genetic and demographic models of the last common ancestor of humans, chimpanzees, and gorillas

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12 December 2020

Strong male-driven evolution of DNA sequences in humans and apes

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12 December 2020

Intra- and interspecific variation in primate gene expression patterns

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12 December 2020

Alu repeats and human genomic diversity

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12 December 2020

Genomewide comparison of DNA sequences between humans and chimpanzees

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12 December 2020

Biomedical applications and studies of molecular evolution: a proposal for a primate genomic library resource

1 reference

12 December 2020

Molecular characterization of the pericentric inversion that causes differences between chimpanzee chromosome 19 and human chromosome 17

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12 December 2020

Divergence between samples of chimpanzee and human DNA sequences is 5%, counting indels

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12 December 2020

Initial sequencing and comparative analysis of the mouse genome

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12 December 2020

Estimating ancestral population sizes and divergence times

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12 December 2020

The Tre2 (USP6) oncogene is a hominoid-specific gene

1 reference

12 December 2020

Phylogenetic shadowing of primate sequences to find functional regions of the human genome

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12 December 2020

Analysis of primate genomic variation reveals a repeat-driven expansion of the human genome

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12 December 2020

Evolution. Chromosomal speciation in primates.

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12 December 2020

Chromosomal Speciation and Molecular Divergence--Accelerated Evolution in Rearranged Chromosomes

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12 December 2020

Accumulating postzygotic isolation genes in parapatry: a new twist on chromosomal speciation

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12 December 2020

Selection on Human Genes as Revealed by Comparisons to Chimpanzee cDNA

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12 December 2020

Hot and cold spots of recombination in the human genome: the reason we should find them and how this can be achieved

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12 December 2020

Comparative analysis of gene-expression patterns in human and African great ape cultured fibroblasts

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12 December 2020

Recent segmental and gene duplications in the mouse genome

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12 December 2020

Refinement of a chimpanzee pericentric inversion breakpoint to a segmental duplication cluster

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12 December 2020

Enrichment of segmental duplications in regions of breaks of synteny between the human and mouse genomes suggest their involvement in evolutionary rearrangements

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12 December 2020

Comparative analyses of multi-species sequences from targeted genomic regions

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12 December 2020

Low nucleotide diversity in chimpanzees and bonobos

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12 December 2020

Elevated gene expression levels distinguish human from non-human primate brains

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12 December 2020

Chromosomal phylogeny and evolution of gibbons (Hylobatidae)

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12 December 2020

Comment on "Chromosomal speciation and molecular divergence-accelerated evolution in rearranged chromosomes".

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12 December 2020

Identification and characterization of multi-species conserved sequences

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12 December 2020

Inferring nonneutral evolution from human-chimp-mouse orthologous gene trios

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12 December 2020

Loss of olfactory receptor genes coincides with the acquisition of full trichromatic vision in primates

1 reference

12 December 2020

MicroRNAs: genomics, biogenesis, mechanism, and function

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12 December 2020

Whole-genome shotgun assembly and comparison of human genome assemblies

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12 December 2020

Evidence for a Complex Demographic History of Chimpanzees

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12 December 2020

Sister grouping of chimpanzees and humans as revealed by genome-wide phylogenetic analysis of brain gene expression profiles

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12 December 2020

Hotspots of mammalian chromosomal evolution

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12 December 2020

Meiotic recombination hot spots and human DNA diversity.

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12 December 2020

Analysis of segmental duplications and genome assembly in the mouse

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12 December 2020

Testing the chromosomal speciation hypothesis for humans and chimpanzees

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12 December 2020

Segmental duplication associated with the human-specific inversion of chromosome 18: a further example of the impact of segmental duplications on karyotype and genome evolution in primates.

1 reference

12 December 2020

Regional patterns of gene expression in human and chimpanzee brains

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12 December 2020

Birth and adaptive evolution of a hominoid gene that supports high neurotransmitter flux

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12 December 2020

Recombination rate and reproductive success in humans

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12 December 2020

Chromosomal rearrangements and the genomic distribution of gene-expression divergence in humans and chimpanzees.

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12 December 2020

Effects of chromosomal rearrangements on human-chimpanzee molecular evolution.

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12 December 2020

Divergence Population Genetics of Chimpanzees

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12 December 2020

Comparative primate genomics

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12 December 2020

Serial segmental duplications during primate evolution result in complex human genome architecture

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12 December 2020

Human brain evolution: insights from microarrays

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12 December 2020

Conservation genomics: applying whole genome studies to species conservation efforts

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12 December 2020

Genomic data support the hominoid slowdown and an Early Oligocene estimate for the hominoid-cercopithecoid divergence

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12 December 2020

Breakpoint analysis of the pericentric inversion distinguishing human chromosome 4 from the homologous chromosome in the chimpanzee (Pan troglodytes).

1 reference

12 December 2020

Mitochondrial DNA variation in Chinese and Indian rhesus macaques (Macaca mulatta).

1 reference

12 December 2020

Inferring the mode of speciation from genomic data: a study of the great apes

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12 December 2020

Comparison of fine-scale recombination rates in humans and chimpanzees.

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12 December 2020

Complex genomic rearrangements lead to novel primate gene function

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12 December 2020

Fine-scale recombination patterns differ between chimpanzees and humans

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12 December 2020

Lineage-specific expansions of retroviral insertions within the genomes of African great apes but not humans and orangutans

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12 December 2020

Molecular characterization of the pericentric inversion of chimpanzee chromosome 11 homologous to human chromosome 9.

1 reference

12 December 2020

Chromosome speciation: humans, Drosophila, and mosquitoes

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12 December 2020

A scan for positively selected genes in the genomes of humans and chimpanzees

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12 December 2020

Human recombination hot spots hidden in regions of strong marker association

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12 December 2020

Molecular characterisation of the pericentric inversion that distinguishes human chromosome 5 from the homologous chimpanzee chromosome

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12 December 2020

Localized breakdown in linkage disequilibrium does not always predict sperm crossover hot spots in the human MHC class II region

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12 December 2020

RAG1 core and V(D)J recombination signal sequences were derived from Transib transposons

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12 December 2020

Evolution at two levels: on genes and form

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12 December 2020

Dynamics of mammalian chromosome evolution inferred from multispecies comparative maps

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12 December 2020

A novel gene family NBPF: intricate structure generated by gene duplications during primate evolution

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12 December 2020

Initial sequence of the chimpanzee genome and comparison with the human genome

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12 December 2020

A genome-wide comparison of recent chimpanzee and human segmental duplications

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12 December 2020

A genome-wide survey of structural variation between human and chimpanzee

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12 December 2020

A fine-scale map of recombination rates and hotspots across the human genome

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12 December 2020

Discovery of human inversion polymorphisms by comparative analysis of human and chimpanzee DNA sequence assemblies

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12 December 2020

A molecular cytogenetic study of chromosome evolution in chimpanzee

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12 December 2020

An initial genetic linkage map of the rhesus macaque (Macaca mulatta) genome using human microsatellite loci

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12 December 2020

The chimpanzee-specific pericentric inversions that distinguish humans and chimpanzees have identical breakpoints in Pan troglodytes and Pan paniscus

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12 December 2020

Polymorphic micro-inversions contribute to the genomic variability of humans and chimpanzees.

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12 December 2020

Genetic signature of anthropogenic population collapse in orang-utans.

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12 December 2020

Variable molecular clocks in hominoids

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12 December 2020

Population history, biogeography, and taxonomy of orangutans (Genus: Pongo) based on a population genetic meta-analysis of multiple loci

1 reference

12 December 2020

Expression profiling in primates reveals a rapid evolution of human transcription factors

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12 December 2020

A preliminary comparative analysis of primate segmental duplications shows elevated substitution rates and a great-ape expansion of intrachromosomal duplications

1 reference

12 December 2020

A second-generation genetic linkage map of the baboon (Papio hamadryas) genome

1 reference

12 December 2020

Hotspots for copy number variation in chimpanzees and humans

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12 December 2020

Genetic evidence for complex speciation of humans and chimpanzees

1 reference

12 December 2020

Demographic history and genetic differentiation in apes

1 reference

12 December 2020

Primate segmental duplications: crucibles of evolution, diversity and disease

1 reference

12 December 2020

Characterization of the human lineage-specific pericentric inversion that distinguishes human chromosome 1 from the homologous chromosomes of the great apes

1 reference

12 December 2020

Identification, characterization and comparative genomics of chimpanzee endogenous retroviruses

1 reference

12 December 2020

Primate molecular divergence dates

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12 December 2020

An RNA gene expressed during cortical development evolved rapidly in humans

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12 December 2020

Evolutionary biology: how did the human species form?

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12 December 2020

Human lineage-specific amplification, selection, and neuronal expression of DUF1220 domains

1 reference

12 December 2020

Restricted gene flow at specific parts of the shrew genome in chromosomal hybrid zones

1 reference

12 December 2020

Diversity of microRNAs in human and chimpanzee brain

1 reference

12 December 2020

Recurrent duplication-driven transposition of DNA during hominoid evolution

1 reference

12 December 2020

An evolutionary view of human recombination

1 reference

12 December 2020

Increased cortical expression of two synaptogenic thrombospondins in human brain evolution

1 reference

12 December 2020

Molecular refinement of gibbon genome rearrangements

1 reference

12 December 2020

Rate of evolution in brain-expressed genes in humans and other primates

1 reference

12 December 2020

A high-resolution map of synteny disruptions in gibbon and human genomes

1 reference

12 December 2020

Chromosomal speciation of humans and chimpanzees revisited: studies of DNA divergence within inverted regions.

1 reference

12 December 2020

Single nucleotide polymorphisms (SNPs) distinguish Indian-origin and Chinese-origin rhesus macaques (Macaca mulatta).

1 reference

12 December 2020

Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model

1 reference

12 December 2020

Primate comparative genomics: lemur biology and evolution

1 reference

12 December 2020

Evolutionary and Biomedical Insights from the Rhesus Macaque Genome

1 reference

12 December 2020

Demographic histories and patterns of linkage disequilibrium in Chinese and Indian rhesus macaques

1 reference

12 December 2020

Genetic structure of chimpanzee populations

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12 December 2020

More genes underwent positive selection in chimpanzee evolution than in human evolution

1 reference

12 December 2020

Restriction of an extinct retrovirus by the human TRIM5alpha antiviral protein

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12 December 2020

A genetic linkage map of the vervet monkey (Chlorocebus aethiops sabaeus).

1 reference

12 December 2020

Gene copy number variation spanning 60 million years of human and primate evolution

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12 December 2020

Promoter regions of many neural- and nutrition-related genes have experienced positive selection during human evolution.

1 reference

12 December 2020

A new approach to estimate parameters of speciation models with application to apes

1 reference

12 December 2020

Ancestral reconstruction of segmental duplications reveals punctuated cores of human genome evolution.

1 reference

12 December 2020

Accelerated rate of gene gain and loss in primates

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12 December 2020

On the association between chromosomal rearrangements and genic evolution in humans and chimpanzees

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12 December 2020

Global analysis of alternative splicing differences between humans and chimpanzees

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12 December 2020

Working memory of numerals in chimpanzees.

1 reference

12 December 2020

Evolution of the genomic rate of recombination in mammals

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12 December 2020

Single nucleotide polymorphisms (SNPs) are highly conserved in rhesus (Macaca mulatta) and cynomolgus (Macaca fascicularis) macaques

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12 December 2020

No effect of recombination on the efficacy of natural selection in primates

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12 December 2020

Genotype, haplotype and copy-number variation in worldwide human populations

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12 December 2020

Worldwide human relationships inferred from genome-wide patterns of variation

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12 December 2020

Molecular mechanisms of chromosomal rearrangement during primate evolution

1 reference

12 December 2020

Complex speciation of humans and chimpanzees

1 reference

12 December 2020

Analysis of chimpanzee history based on genome sequence alignments

1 reference

12 December 2020

Towards a transgenic model of Huntington's disease in a non-human primate

1 reference

12 December 2020

Mouse segmental duplication and copy number variation

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12 December 2020

An evolutionarily conserved sexual signature in the primate brain

1 reference

12 December 2020

Next-generation DNA sequencing methods

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12 December 2020

Estimation of hominoid ancestral population sizes under bayesian coalescent models incorporating mutation rate variation and sequencing errors

1 reference

12 December 2020

Long-range LD can confound genome scans in admixed populations

1 reference

12 December 2020

Patterns of positive selection in six Mammalian genomes

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12 December 2020

The genomic distribution of intraspecific and interspecific sequence divergence of human segmental duplications relative to human/chimpanzee chromosomal rearrangements

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12 December 2020

Human-specific gain of function in a developmental enhancer

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12 December 2020

Copy number variation and evolution in humans and chimpanzees

1 reference

12 December 2020

A common sequence motif associated with recombination hot spots and genome instability in humans

1 reference

12 December 2020

A burst of segmental duplications in the genome of the African great ape ancestor

1 reference

12 December 2020

The molecular clock runs more slowly in man than in apes and monkeys

1 reference

12 December 2020

Rates of molecular evolution: the hominoid slowdown

1 reference

12 December 2020

Extensive polymorphism in the mitochondrial DNA of apes

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12 December 2020

The origin of man: a chromosomal pictorial legacy

1 reference

12 December 2020

Interchromosomal duplications of the adrenoleukodystrophy locus: a phenomenon of pericentromeric plasticity.

1 reference

12 December 2020

Members of the olfactory receptor gene family are contained in large blocks of DNA duplicated polymorphically near the ends of human chromosomes

1 reference

12 December 2020

Toward a phylogenetic classification of Primates based on DNA evidence complemented by fossil evidence

1 reference

12 December 2020

Monophyletic origin of Alu elements in primates

1 reference

12 December 2020

10.1146/ANNUREV.GENOM.9.081307.164420

Identifiers

DOI

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=PMCID:PMC6662594&resulttype=core&format=json

15 May 2020

1 reference