(Q37563687)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

title

Bipartite pattern discovery by entropy minimization-based multiple local alignment (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

author name string

Chengpeng Bi

series ordinal

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

language of work or name

English

0 references

publication date

23 September 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

published in

Nucleic Acids Research

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

volume

32

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

issue

17

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

page(s)

4979-4991

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

Fast multiple alignment of ungapped DNA sequences using information theory and a relaxation method

2 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Finding functional sequence elements by multiple local alignment

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

JASPAR: an open-access database for eukaryotic transcription factor binding profiles

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Induction of drug metabolism: the role of nuclear receptors.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Genome-wide prediction, display and refinement of binding sites with information theory-based models

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

The nuclear pregnane X receptor: a key regulator of xenobiotic metabolism

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

MaskerAid: a performance enhancement to RepeatMasker

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

DNA binding sites: representation and discovery

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Using Dirichlet mixture priors to derive hidden Markov models for protein families.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Identifying protein-binding sites from unaligned DNA fragments

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Methods for calculating the probabilities of finding patterns in sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Sequence logos: a new way to display consensus sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Development and refinement of pregnane X receptor (PXR) DNA binding site model using information theory: insights into PXR-mediated gene regulation.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

DBTBS: database of transcriptional regulation in Bacillus subtilis and its contribution to comparative genomics

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Computer methods to locate signals in nucleic acid sequences

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Transcriptional control of intestinal cytochrome P-4503A by 1alpha,25-dihydroxy vitamin D3.

14 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

All natural DR3-type vitamin D response elements show a similar functionality in vitro

28 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Identification of a response element for vitamin D3 and retinoic acid in the promoter region of the human fructose-1,6-bisphosphatase gene

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

An expectation maximization (EM) algorithm for the identification and characterization of common sites in unaligned biopolymer sequences.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Expectation maximization algorithm for identifying protein-binding sites with variable lengths from unaligned DNA fragments

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

BioOptimizer: a Bayesian scoring function approach to motif discovery.

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Anatomy of Escherichia coli ribosome binding sites.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Information content of individual genetic sequences.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=521645

Identifying target sites for cooperatively binding factors

1 September 2018

1 reference

12 December 2020

Evidence for regulation of amelogenin gene expression by 1,25-dihydroxyvitamin D3 in vivo

1 reference

12 December 2020

Nuclear receptor coactivators facilitate vitamin D receptor homodimer action on direct repeat hormone response elements

1 reference

12 December 2020

The vitamin D receptor binds in a transcriptionally inactive form and without a defined polarity on a retinoic acid response element

1 reference

12 December 2020

DNA sequence determinants for binding of the Escherichia coli catabolite gene activator protein

1 reference

12 December 2020

Identification of DNA sequences that bind retinoid X receptor-1,25(OH)2D3-receptor heterodimers with high affinity

1 reference

12 December 2020

Identifiers

DOI

10.1093/NAR/GKH825

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15388800%20AND%20SRC:MED&resulttype=core&format=json

2 January 2020

1 reference