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Finding functional sequence elements by multiple local alignment
scientific article published on 02 January 2004
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
title
Finding functional sequence elements by multiple local alignment
(English)
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
main subject
sequence alignment
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author
Martin C Frith
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1
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
John L Spouge
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3
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John L Spouge
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Europe PubMed Central
PMC publication ID
373279
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
author name string
Ulla Hansen
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2
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Europe PubMed Central
PMC publication ID
373279
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
Zhiping Weng
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4
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
language of work or name
English
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publication date
2 January 2004
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Europe PubMed Central
PMC publication ID
373279
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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
published in
Nucleic Acids Research
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
volume
32
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
issue
1
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
page(s)
189-200
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Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
cites work
Homotypic regulatory clusters in Drosophila.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Finding motifs in the twilight zone
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
The correlation error and finite-size correction in an ungapped sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Evolution of transcription factor binding sites in Mammalian gene regulatory regions: conservation and turnover
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Finding motifs using random projections
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Multiple sequence alignment using partial order graphs
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Diversity in the mechanisms of gene regulation by estrogen receptors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Detection of cis-element clusters in higher eukaryotic DNA.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Evolutionary HMMs: a Bayesian approach to multiple alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Estrogen receptor interaction with estrogen response elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
BioProspector: discovering conserved DNA motifs in upstream regulatory regions of co-expressed genes.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Phylogenetic footprinting of transcription factor binding sites in proteobacterial genomes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Computational identification of cis-regulatory elements associated with groups of functionally related genes in Saccharomyces cerevisiae
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
TRANSFAC: an integrated system for gene expression regulation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Identifying DNA and protein patterns with statistically significant alignments of multiple sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
DIALIGN 2: improvement of the segment-to-segment approach to multiple sequence alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Finding DNA regulatory motifs within unaligned noncoding sequences clustered by whole-genome mRNA quantitation
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Automatic extraction of motifs represented in the hidden Markov model from a number of DNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Finding the most significant common sequence and structure motifs in a set of RNA sequences
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Analysis of compositionally biased regions in sequence databases
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Local alignment statistics
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
The crystal structure of the estrogen receptor DNA-binding domain bound to DNA: how receptors discriminate between their response elements
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Detecting subtle sequence signals: a Gibbs sampling strategy for multiple alignment
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
The value of prior knowledge in discovering motifs with MEME
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Fitting a mixture model by expectation maximization to discover motifs in biopolymers
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Using Dirichlet mixture priors to derive hidden Markov models for protein families
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Methods for assessing the statistical significance of molecular sequence features by using general scoring schemes
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
Amino acid substitution matrices from an information theoretic perspective
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
A workbench for multiple alignment construction and analysis
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
29 September 2017
A new algorithm for best subsequence alignments with application to tRNA-rRNA comparisons
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
27 June 2018
Hybrid alignment: high-performance with universal statistics.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
A higher-order background model improves the detection of promoter regulatory elements by Gibbs sampling
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
Combining frequency and positional information to predict transcription factor binding sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
Tsukuba BB: a branch and bound algorithm for local multiple alignment of DNA and protein sequences.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
Human-mouse genome comparisons to locate regulatory sites
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
ANN-Spec: a method for discovering transcription factor binding sites with improved specificity.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
Local multiple sequence alignment using dead-end elimination.
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
4 September 2018
Computer-assisted identification of cell cycle-related genes: new targets for E2F transcription factors
1 reference
stated in
PubMed Central
reference URL
https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=373279
retrieved
20 October 2018
Conservation of DNA Regulatory Motifs and Discovery of New Motifs in Microbial Genomes
1 reference
stated in
PubMed
reference URL
https://pubmed.ncbi.nlm.nih.gov/14704356
retrieved
12 December 2020
based on heuristic
inferred from PubMed ID database lookup
Identifiers
DOI
10.1093/NAR/GKH169
1 reference
stated in
Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
PMC publication ID
373279
1 reference
stated in
Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
PubMed publication ID
14704356
1 reference
stated in
Europe PubMed Central
PMC publication ID
373279
reference URL
https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:14704356%20AND%20SRC:MED&resulttype=core&format=json
retrieved
17 November 2019
ResearchGate publication ID
8936115
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