(Q24530466)

English

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome

scientific article

In more languages

Statements

scholarly article

0 references

Exploiting transcription factor binding site clustering to identify cis-regulatory modules involved in pattern formation in the Drosophila genome (English)

0 references

0 references

4

0 references

Michael B. Eisen

8

object named as

Michael B Eisen

0 references

object named as

Yutaka Nibu

2

0 references

Benjamin P Berman

object named as

Benjamin P Berman

1

0 references

Gerald M. Rubin

object named as

Gerald M Rubin

7

0 references

Susan E. Celniker

5

object named as

Susan E Celniker

0 references

author name string

Barret D Pfeiffer

3

0 references

Michael Levine

6

0 references

language of work or name

0 references

publication date

22 January 2002

0 references

Proceedings of the National Academy of Sciences of the United States of America

0 references

99

0 references

757-62

0 references

2

0 references

Molecular analysis of odd-skipped, a zinc finger encoding segmentation gene with a novel pair-rule expression pattern

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

24 March 2017

https://api.crossref.org/works/10.1073%2FPNAS.231608898

7 January 2021

based on heuristic

inferred from DOI database lookup

Regulation of even-skipped stripe 2 in the Drosophila embryo

2 references

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

24 March 2017

https://api.crossref.org/works/10.1073%2FPNAS.231608898

7 January 2021

based on heuristic

inferred from DOI database lookup

The genome sequence of Drosophila melanogaster

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

24 March 2017

Fitting a mixture model by expectation maximization to discover motifs in biopolymers

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

24 March 2017

DNA binding sites: representation and discovery

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

24 March 2017

Identifying DNA and protein patterns with statistically significant alignments of multiple sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

7 April 2017

Detection of cis-element clusters in higher eukaryotic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

A predictive model for regulatory sequences directing liver-specific transcription.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Genomic strategies to identify mammalian regulatory sequences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

The TRANSFAC system on gene expression regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Evidence for stabilizing selection in a eukaryotic enhancer element.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

The pipsqueak protein of Drosophila melanogaster binds to GAGA sequences through a novel DNA-binding domain

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Specificity, free energy and information content in protein-DNA interactions

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Functional analysis of eve stripe 2 enhancer evolution in Drosophila: rules governing conservation and change.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Gene regulation in the Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Regulation of two pair-rule stripes by a single enhancer in the Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

The eve stripe 2 enhancer employs multiple modes of transcriptional synergy

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

A Drosophila homologue of human Sp1 is a head-specific segmentation gene.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Gap genes define the limits of antennapedia and bithorax gene expression during early development in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Autoregulatory and gap gene response elements of the even-skipped promoter of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

A novel spatial transcription pattern associated with the segmentation gene, giant, of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Establishment of the Deformed expression stripe requires the combinatorial action of coordinate, gap and pair-rule proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Synthetic oligonucleotides recreate Drosophila fushi tarazu zebra-stripe expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

The origin of pattern and polarity in the Drosophila embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Regulation of a Segmentation Stripe by Overlapping Activators and Repressors in the Drosophila Embryo

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

27 September 2017

Analysis of an even-skipped rescue transgene reveals both composite and discrete neuronal and early blastoderm enhancers, and multi-stripe positioning by gap gene repressor gradients

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Targeting gene expression to the head: the Drosophila orthodenticle gene is a direct target of the Bicoid morphogen.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Identification of regulatory regions which confer muscle-specific gene expression.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

A cascade of transcriptional control leading to axis determination in Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

A statistical model for locating regulatory regions in genomic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Orthodenticle regulation during embryonic head development in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Selection of DNA binding sites by regulatory proteins. Statistical-mechanical theory and application to operators and promoters.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Vectors for Drosophila P-element-mediated transformation and tissue culture transfection.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

A molecular gradient in early Drosophila embryos and its role in specifying the body pattern.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Early and late periodic patterns of even skipped expression are controlled by distinct regulatory elements that respond to different spatial cues.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

The caudal gene product is a direct activator of fushi tarazu transcription during Drosophila embryogenesis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Transcriptional control of Drosophila fushi tarazu zebra stripe expression

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

The spatial and temporal deployment of Dfd and Scr transcripts throughout development of Drosophila

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Expression of the caudal gene in the germ line of Drosophila: formation of an RNA and protein gradient during early embryogenesis.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

The orthodenticle gene is regulated by bicoid and torso and specifies Drosophila head development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Control of the initiation of homeotic gene expression by the gap genes giant and tailless in Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Mutually repressive interactions between the gap genes giant and Krüppel define middle body regions of the Drosophila embryo.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Spatial regulation of the gap gene giant during Drosophila development.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Interactions of the Drosophila gap gene giant with maternal and zygotic pattern-forming genes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

The giant gene of Drosophila encodes a b-ZIP DNA-binding protein that regulates the expression of other segmentation gap genes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

30 May 2018

Drosophila neuroblasts sequentially express transcription factors which specify the temporal identity of their neuronal progeny.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Human-mouse genome comparisons to locate regulatory sites

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

The even-skipped locus is contained in a 16-kb chromatin domain.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Concentration-dependent patterning by an ectopic expression domain of the Drosophila gap gene knirps.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Trans- and cis-acting requirements for blastodermal expression of the head gap gene buttonhead.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Regulation of expression domains and effects of ectopic expression reveal gap gene-like properties of the linked pdm genes of Drosophila.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Activation of posterior gap gene expression in the Drosophila blastoderm.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=117378

29 November 2018

Genes regulated cooperatively by one or more transcription factors and their identification in whole eukaryotic genomes

1 reference

https://pubmed.ncbi.nlm.nih.gov/11805330

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

A model of spatially restricted transcription in opposing gradients of activators and repressors

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.231608898

7 January 2021

based on heuristic

inferred from DOI database lookup

Identifiers

10.1073/PNAS.231608898

0 references

2002PNAS...99..757B

0 references

0 references

0 references

ResearchGate publication ID

0 references

Sitelinks

Wikipedia(0 entries)

Wikibooks(0 entries)

Wikinews(0 entries)

Wikiquote(0 entries)

Wikisource(0 entries)

Wikiversity(0 entries)

Wikivoyage(0 entries)

Wiktionary(0 entries)

Multilingual sites(0 entries)

Retrieved from "https://www.wikidata.org/w/index.php?title=Q24530466&oldid=1549167330"