(Q37570840)

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

title

Darwinian adaptation of proteorhodopsin to different light intensities in the marine environment (English)

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Katherine A Dunn

series ordinal

2

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

author name string

Gazalah Sabehi

series ordinal

3

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

Oded Béjà

series ordinal

4

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

language of work or name

English

0 references

publication date

4 October 2004

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

Proceedings of the National Academy of Sciences of the United States of America

3 January 2020

published in

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

volume

101

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

issue

41

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

page(s)

14824-14829

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

Novel Proteorhodopsin variants from the Mediterranean and Red Seas.

3 January 2020

cites work

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Maximum likelihood methods for detecting adaptive evolution after gene duplication.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Diversification and spectral tuning in marine proteorhodopsins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Proteorhodopsin is a light-driven proton pump with variable vectoriality

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Codon-substitution models for detecting molecular adaptation at individual sites along specific lineages

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Proton transfers in the photochemical reaction cycle of proteorhodopsin

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

The rapid evolution of reproductive proteins

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

DAMBE: software package for data analysis in molecular biology and evolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Proteorhodopsin phototrophy in the ocean.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

A general empirical model of protein evolution derived from multiple protein families using a maximum-likelihood approach

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Evidence for positive selection in foot-and-mouth disease virus capsid genes from field isolates

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Statistical methods for detecting molecular adaptation

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Bacterial rhodopsin: evidence for a new type of phototrophy in the sea

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Codon-substitution models for heterogeneous selection pressure at amino acid sites

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Structure of bacteriorhodopsin at 1.55 A resolution

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Likelihood models for detecting positively selected amino acid sites and applications to the HIV-1 envelope gene

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

PAML: a program package for phylogenetic analysis by maximum likelihood

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

A graphical method for detecting recombination in phylogenetic data sets

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

A new method of inference of ancestral nucleotide and amino acid sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

A codon-based model of nucleotide substitution for protein-coding DNA sequences

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Maximum likelihood phylogenetic estimation from DNA sequences with variable rates over sites: approximate methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Dating of the human-ape splitting by a molecular clock of mitochondrial DNA

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Adaptation of bird hemoglobins to high altitudes: demonstration of molecular mechanism by protein engineering

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Molecular adaptation of hemoglobin function in mammals

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Bacterial photosynthesis in surface waters of the open ocean

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=522022

Genomics and evolution. Shotgun sequencing in the sea: a blast from the past?

6 September 2017

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0403999101

TOPAL 2.0: improved detection of mosaic sequences within multiple alignments.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0403999101

Accuracy and power of bayes prediction of amino acid sites under positive selection

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0403999101

Spectroscopic and photochemical characterization of a deep ocean proteorhodopsin

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0403999101

Characterization of RS29, a blue-green proteorhodopsin variant from the Red Sea.

21 January 2018

1 reference

https://api.crossref.org/works/10.1073%2FPNAS.0403999101

Frequent false detection of positive selection by the likelihood method with branch-site models

21 January 2018

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466697

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Species adaptation in a protein molecule

1 reference

PubMed

https://pubmed.ncbi.nlm.nih.gov/15466697

inferred from PubMed ID database lookup

12 December 2020

based on heuristic

Identifiers

DOI

10.1073/PNAS.0403999101

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

0 references

1 reference

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:15466697%20AND%20SRC:MED&resulttype=core&format=json

3 January 2020

1 reference