(Q37619269)

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Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array

scientific article published on 22 January 2014

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scholarly article

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Europe PubMed Central

PMC publication ID

21 August 2017

Reducing the risk of false discovery enabling identification of biologically significant genome-wide methylation status using the HumanMethylation450 array (English)

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Europe PubMed Central

PMC publication ID

21 August 2017

2

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

3

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Christopher M Hovens

7

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

Geoff Macintyre

8

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

author name string

Haroon Naeem

1

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1 June 2020

Matthew K H Hong

4

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1 June 2020

John S Pedersen

5

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Europe PubMed Central

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1 June 2020

Niall M Corcoran

6

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Europe PubMed Central

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1 June 2020

language of work or name

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publication date

22 January 2014

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Europe PubMed Central

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21 August 2017

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

15

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Europe PubMed Central

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https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

51

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Europe PubMed Central

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1 June 2020

describes a project that uses

object named as

minfi

1 reference

CZ Software Mentions: A large dataset of software mentions in the biomedical literature

A comprehensive overview of Infinium HumanMethylation450 data processing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Charting a dynamic DNA methylation landscape of the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

A data-driven approach to preprocessing Illumina 450K methylation array data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Additional annotation enhances potential for biologically-relevant analysis of the Illumina Infinium HumanMethylation450 BeadChip array

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

DNA methylation alterations exhibit intraindividual stability and interindividual heterogeneity in prostate cancer metastases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Discovery of cross-reactive probes and polymorphic CpGs in the Illumina Infinium HumanMethylation450 microarray

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

A comparison of the whole genome approach of MeDIP-seq to the targeted approach of the Infinium HumanMethylation450 BeadChip(®) for methylome profiling

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Genome-wide methylation profiles reveal quantitative views of human aging rates

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

The UCSC Genome Browser database: extensions and updates 2013.

1 reference

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23 August 2017

Guthrie card methylomics identifies temporally stable epialleles that are present at birth in humans

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Bis-SNP: combined DNA methylation and SNP calling for Bisulfite-seq data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

SWAN: Subset-quantile within array normalization for illumina infinium HumanMethylation450 BeadChips

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Functions of DNA methylation: islands, start sites, gene bodies and beyond

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

IMA: an R package for high-throughput analysis of Illumina's 450K Infinium methylation data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

CpG islands and the regulation of transcription

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Natural genetic variation caused by small insertions and deletions in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

A map of human genome variation from population-scale sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Profiling DNA methylomes from microarray to genome-scale sequencing

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Dynamic changes in the human methylome during differentiation

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Principles and challenges of genomewide DNA methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

DNA methylation pattern changes upon long-term culture and aging of human mesenchymal stromal cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Human DNA methylomes at base resolution show widespread epigenomic differences

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Copy number variation has little impact on bead-array-based measures of DNA methylation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

AR, the cell cycle, and prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Sequence polymorphisms cause many false cis eQTLs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Identification and analysis of functional elements in 1% of the human genome by the ENCODE pilot project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

DNA hypomethylation and human diseases.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Database resources of the National Center for Biotechnology Information

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Reduced representation bisulfite sequencing for comparative high-resolution DNA methylation analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Chromosome-wide and promoter-specific analyses identify sites of differential DNA methylation in normal and transformed human cells

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Cytosine methylation and CpG, TpG (CpA) and TpA frequencies

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

DNA methylation in cancer: too much, but also too little

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

DNA hypermethylation in tumorigenesis: epigenetics joins genetics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

23 August 2017

Exploring the utility of human DNA methylation arrays for profiling mouse genomic DNA.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

6 September 2017

Microscopic assessment of fresh prostate tumour specimens yields significantly increased rates of correctly annotated samples for downstream analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

6 September 2017

Overexpression of androgen receptor enhances the binding of the receptor to the chromatin in prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

6 September 2017

Validation of a DNA methylation microarray for 450,000 CpG sites in the human genome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

6 September 2017

Quantitative comparison of genome-wide DNA methylation mapping technologies.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

14 September 2017

Whole-genome DNA methylation profiling using MethylCap-seq.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

14 September 2017

Report on the Infinium 450k methylation array analysis workshop: April 20, 2012 UCL, London, UK.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

25 June 2018

SNPinProbe_1.0: a database for filtering out probes in the Affymetrix GeneChip human exon 1.0 ST array potentially affected by SNPs

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

25 June 2018

Cytosine methylation and the fate of CpG dinucleotides in vertebrate genomes.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

25 June 2018

Whole-genome methylation sequencing reveals distinct impact of differential methylations on gene transcription in prostate cancer

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

1 September 2018

Rigorous assessment of gene set enrichment tests

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

1 September 2018

High density DNA methylation array with single CpG site resolution

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

1 September 2018

Sequence overlap between autosomal and sex-linked probes on the Illumina HumanMethylation27 microarray.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

1 September 2018

Differential genome-wide array-based methylation profiles in prognostic subsets of chronic lymphocytic leukemia

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3943510

1 September 2018

DNA Methylation and Cancer

1 reference

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3 December 2018

Evaluation of the Infinium Methylation 450K technology

1 reference

https://pubmed.ncbi.nlm.nih.gov/24447442

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Methylation of the androgen receptor promoter CpG island is associated with loss of androgen receptor expression in prostate cancer cells

1 reference

https://pubmed.ncbi.nlm.nih.gov/24447442

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Efficacy of primary hormone therapy for localized or locally advanced prostate cancer: results of a 10-year follow-up

1 reference

https://pubmed.ncbi.nlm.nih.gov/24447442

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Prostate cancer: New insight into mechanisms of castration resistance

1 reference

https://pubmed.ncbi.nlm.nih.gov/24447442

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Evolutionary changes in CpG and methylation levels in the genome of vertebrates

1 reference

https://pubmed.ncbi.nlm.nih.gov/24447442

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1186/1471-2164-15-51

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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Europe PubMed Central

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1 June 2020

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

https://www.ebi.ac.uk/europepmc/webservices/rest/search?query=EXT_ID:24447442%20AND%20SRC:MED&resulttype=core&format=json

1 June 2020

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