(Q37632829)

English

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project

scientific article published on 06 December 2013

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scholarly article

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Europe PubMed Central

PMC publication ID

21 August 2017

State of the human proteome in 2013 as viewed through PeptideAtlas: comparing the kidney, urine, and plasma proteomes for the biology- and disease-driven Human Proteome Project (English)

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

3

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Europe PubMed Central

PMC publication ID

21 August 2017

2

object named as

Eric W Deutsch

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Europe PubMed Central

PMC publication ID

21 August 2017

author name string

Terry Farrah

1

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Europe PubMed Central

PMC publication ID

21 August 2017

Zhi Sun

4

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Europe PubMed Central

PMC publication ID

21 August 2017

Julian D Watts

5

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Tadashi Yamamoto

6

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

David Shteynberg

7

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

Micheleen M Harris

8

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Europe PubMed Central

PMC publication ID

21 August 2017

Robert L Moritz

9

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Europe PubMed Central

PMC publication ID

21 August 2017

publication date

6 December 2013

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Europe PubMed Central

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21 August 2017

Journal of Proteome Research

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Europe PubMed Central

PMC publication ID

21 August 2017

13

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Europe PubMed Central

PMC publication ID

21 August 2017

1

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

60-75

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Europe PubMed Central

PMC publication ID

21 August 2017

ProteomeXchange provides globally coordinated proteomics data submission and dissemination

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The human urine metabolome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Combining results of multiple search engines in proteomics

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Profiling and annotation of human kidney glomerulus proteome.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The state of the human proteome in 2012 as viewed through PeptideAtlas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

neXtProt: organizing protein knowledge in the context of human proteome projects

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Analysis of the urine proteome via a combination of multi-dimensional approaches

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The human proteome project: Current state and future direction.

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https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

A high-confidence human plasma proteome reference set with estimated concentrations in PeptideAtlas

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Developing a kidney and urinary pathway knowledge base

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

A comprehensive map of the human urinary proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The human serum metabolome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Quantitative analysis of the intra- and inter-individual variability of the normal urinary proteome

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Shotgun proteomics identifies proteins specific for acute renal transplant rejection.

1 reference

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23 August 2017

New loci associated with kidney function and chronic kidney disease

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

A guided tour of the Trans-Proteomic Pipeline

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23 August 2017

Trans-proteomic pipeline: a pipeline for proteomic analysis

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

BioGPS: an extensible and customizable portal for querying and organizing gene annotation resources

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Protein identification false discovery rates for very large proteomics data sets generated by tandem mass spectrometry

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

An attempt to understand kidney's protein handling function by comparing plasma and urine proteomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Large-scale proteomics and phosphoproteomics of urinary exosomes

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

AmiGO: online access to ontology and annotation data

1 reference

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23 August 2017

BioVenn - a web application for the comparison and visualization of biological lists using area-proportional Venn diagrams

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

A high confidence, manually validated human blood plasma protein reference set

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The Protein Identifier Cross-Referencing (PICR) service: reconciling protein identifiers across multiple source databases

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Development and validation of a spectral library searching method for peptide identification from MS/MS.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Absolute protein expression profiling estimates the relative contributions of transcriptional and translational regulation.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Using GOstats to test gene lists for GO term association

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The human urinary proteome contains more than 1500 proteins, including a large proportion of membrane proteins

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Injury-induced innate immune response in human skin mediated by transactivation of the epidermal growth factor receptor

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23 August 2017

A uniform proteomics MS/MS analysis platform utilizing open XML file formats

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Detection of bile salt-dependent lipase, a 110 kDa pancreatic protein, in urines of healthy subjects.

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Challenges in deriving high-confidence protein identifications from data gathered by a HUPO plasma proteome collaborative study

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The PeptideAtlas project

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 proteins and a publicly-available database

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Open source system for analyzing, validating, and storing protein identification data

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Identification and proteomic profiling of exosomes in human urine

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

The International Protein Index: an integrated database for proteomics experiments

1 reference

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23 August 2017

TANDEM: matching proteins with tandem mass spectra

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23 August 2017

A statistical model for identifying proteins by tandem mass spectrometry

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23 August 2017

Mass spectrometry-based proteomics

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23 August 2017

The human plasma proteome: history, character, and diagnostic prospects

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3951210

23 August 2017

Segment-specific c-ErbB2 expression in human autosomal recessive polycystic kidney disease

1 reference

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23 August 2017

Human plasma epidermal growth factor/beta-urogastrone is associated with blood platelets

1 reference

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Potential physiologic roles for epidermal growth factor in the kidney

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23 August 2017

Olfactomedin 4, a novel marker for the differentiation and progression of gastrointestinal cancers

1 reference

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6 September 2017

Proteomics database in chronic kidney disease

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6 September 2017

Olfactomedin 4 promotes S-phase transition in proliferation of pancreatic cancer cells

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14 September 2017

Human Plasma PeptideAtlas

1 reference

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28 September 2017

Absolute proteomic quantification of the activity state of proteases and proteolytic cleavages using proteolytic signature peptides and isobaric tags.

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The biology/disease-driven human proteome project (B/D-HPP): enabling protein research for the life sciences community

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1 September 2018

A first step toward completion of a genome-wide characterization of the human proteome

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Using the Human Plasma PeptideAtlas to study human plasma proteins

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A comprehensive and non-prefractionation on the protein level approach for the human urinary proteome: touching phosphorylation in urine

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1 September 2018

Immunohistochemical localization of the epidermal growth factor, transforming growth factor alpha, and their receptor in the human mesonephros and metanephros

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based on heuristic

inferred from PubMed ID database lookup

In-depth proteomic profiling of the normal human kidney glomerulus using two-dimensional protein prefractionation in combination with liquid chromatography-tandem mass spectrometry

1 reference

https://pubmed.ncbi.nlm.nih.gov/24261998

12 December 2020

based on heuristic

inferred from PubMed ID database lookup

Identifiers

10.1021/PR4010037

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PMC publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

PubMed publication ID

1 reference

Europe PubMed Central

PMC publication ID

21 August 2017

ResearchGate publication ID

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