(Q37643284)

21 August 2017

A rice gene for microbial symbiosis, Oryza sativa CCaMK, reduces CH4 flux in a paddy field with low nitrogen input (English)

1 reference

21 August 2017

1 reference

Oryza sativa

1 reference

Takeshi Tokida

5

0 references

author name string

Zhihua Bao

1

1 reference

21 August 2017

Aya Watanabe

2

1 reference

21 August 2017

Kazuhiro Sasaki

3

1 reference

21 August 2017

Takashi Okubo

4

1 reference

21 August 2017

Dongyan Liu

6

1 reference

21 August 2017

Seishi Ikeda

7

1 reference

21 August 2017

Haruko Imaizumi-Anraku

8

1 reference

21 August 2017

Susumu Asakawa

9

1 reference

21 August 2017

Tadashi Sato

10

1 reference

21 August 2017

Hisayuki Mitsui

11

1 reference

21 August 2017

Kiwamu Minamisawa

12

1 reference

21 August 2017

language of work or name

English

0 references

publication date

17 January 2014

1 reference

Applied and Environmental Microbiology

21 August 2017

1 reference

21 August 2017

80

1 reference

21 August 2017

6

1 reference

21 August 2017

1995-2003

1 reference

Inhibition of methane oxidation by nitrogenous fertilizers in a paddy soil

21 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Functional characteristics of an endophyte community colonizing rice roots as revealed by metagenomic analysis

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

The genotype of the calcium/calmodulin-dependent protein kinase gene (CCaMK) determines bacterial community diversity in rice roots under paddy and upland field conditions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

MEGA5: Molecular Evolutionary Genetics Analysis Using Maximum Likelihood, Evolutionary Distance, and Maximum Parsimony Methods

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

RiceXPro: a platform for monitoring gene expression in japonica rice grown under natural field conditions

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

A dominant function of CCaMK in intracellular accommodation of bacterial and fungal endosymbionts

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Introducing mothur: open-source, platform-independent, community-supported software for describing and comparing microbial communities

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Nitrogen as a regulatory factor of methane oxidation in soils and sediments.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Pleomorphomonas koreensis sp. nov., a nitrogen-fixing species in the order Rhizobiales

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Evolution of signal transduction in intracellular symbiosis.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Contribution of the Tos17 retrotransposon to rice functional genomics

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Microbiology of flooded rice paddies

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Stimulation by ammonium-based fertilizers of methane oxidation in soil around rice roots

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Rhizobium-legume symbiosis and nitrogen fixation under severe conditions and in an arid climate

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Molecular characterization of functional and phylogenetic genes from natural populations of methanotrophs in lake sediments.

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Life in grasses: diazotrophic endophytes

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

23 August 2017

Methanotrophic bacteria

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

The neighbor-joining method: a new method for reconstructing phylogenetic trees

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

The global methane cycle: recent advances in understanding the microbial processes involved

23 August 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

How close are we to nitrogen-fixing cereals?

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

nifH sequences and nitrogen fixation in type I and type II methanotrophs

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Changes in activity and community structure of methane-oxidizing bacteria over the growth period of rice

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Population dynamics of type I and II methanotrophic bacteria in rice soils.

6 September 2017

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice

25 June 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Effect of nitrogen fertilization on methane oxidation, abundance, community structure, and gene expression of methanotrophs in the rice rhizosphere

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Biogeography of wetland rice methanotrophs.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Rice roots select for type I methanotrophs in rice field soil.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Divergence of evolutionary ways among common sym genes: CASTOR and CCaMK show functional conservation between two symbiosis systems and constitute the root of a common signaling pathway.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Fungal symbiosis in rice requires an ortholog of a legume common symbiosis gene encoding a Ca2+/calmodulin-dependent protein kinase

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Structure and activity of bacterial community inhabiting rice roots and the rhizosphere

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Deregulation of a Ca2+/calmodulin-dependent kinase leads to spontaneous nodule development.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

In situ stable isotope probing of methanogenic archaea in the rice rhizosphere

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Plastid proteins crucial for symbiotic fungal and bacterial entry into plant roots.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

A putative Ca2+ and calmodulin-dependent protein kinase required for bacterial and fungal symbioses.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

The mcrA gene as an alternative to 16S rRNA in the phylogenetic analysis of methanogen populations in landfill

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Molecular phylogeny of type II methane-oxidizing bacteria isolated from various environments.

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

The microbial methane cycle

1 September 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Methanotrophic bacteria associated to rice roots: the cultivar effect assessed by T-RFLP and microarray analysis

2 October 2018

1 reference

https://eutils.ncbi.nlm.nih.gov/entrez/eutils/elink.fcgi?dbfrom=pmc&linkname=pmc_refs_pubmed&retmode=json&id=3957643

Comparing field and microcosm experiments: a case study on methano- and methylo-trophic bacteria in paddy soil

3 December 2018

1 reference

12 December 2020

Mechanism of Methane Transport from the Rhizosphere to the Atmosphere through Rice Plants

1 reference

12 December 2020

Nodulation independent of rhizobia induced by a calcium-activated kinase lacking autoinhibition

1 reference

12 December 2020

Composition of archaeal community in a paddy field as affected by rice cultivar and N fertilizer

1 reference

12 December 2020

Do nitrogen fertilizers stimulate or inhibit methane emissions from rice fields?

1 reference

12 December 2020

Identifiers

DOI

10.1128/AEM.03646-13

1 reference

21 August 2017

1 reference

21 August 2017

PubMed publication ID

24441161

1 reference